Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potrs008933g29823
View in Genome Browser
Position
Potrs008933:22294-22452 (+)
158bp
Gene Type
gene
Gene Description (Protein Product)
Ubiquitin-like domain
Organism
Populus tremuloides
Also AS Potri.011G026600AT4G05050Potri.011G026600.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs009027g13729 Belongs to the ubiquitin-conjugating enzyme family
Potrs037721g24523 ubiquitin-conjugating enzyme
Potrs011932g16817 Belongs to the ubiquitin-conjugating enzyme family
Regulatory gene
Potrs000389g00482 Dof domain, zinc finger
Potrs000883g01405 dof zinc finger protein
Potrs000913g29758 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000209 protein polyubiquitination BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006464 protein modification process BP
GO:0006508 proteolysis BP
GO:0006513 protein monoubiquitination BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007049 cell cycle BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009987 cellular process BP
GO:0010498 proteasomal protein catabolic process BP
GO:0010499 proteasomal ubiquitin-independent protein catabolic process BP
GO:0016567 protein ubiquitination BP
GO:0016579 protein deubiquitination BP
GO:0019538 protein metabolic process BP
GO:0019953 sexual reproduction BP
GO:0022402 cell cycle process BP
GO:0022413 reproductive process in single-celled organism BP
GO:0022414 reproductive process BP
GO:0030154 cell differentiation BP
GO:0030163 protein catabolic process BP
GO:0030435 sporulation resulting in formation of a cellular spore BP
GO:0030437 ascospore formation BP
GO:0031386 protein tag MF
GO:0032446 protein modification by small protein conjugation BP
GO:0032502 developmental process BP
GO:0032505 reproduction of a single-celled organism BP
GO:0034293 sexual sporulation BP
GO:0036211 protein modification process BP
GO:0043008 ATP-dependent protein binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0043934 sporulation BP
GO:0043935 sexual sporulation resulting in formation of a cellular spore BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0048468 cell development BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0051321 meiotic cell cycle BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0051704 obsolete multi-organism process BP
GO:0070646 protein modification by small protein removal BP
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0071704 organic substance metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1903046 meiotic cell cycle process BP
KEGG Term Name Description
map04120 Ubiquitin mediated proteolysis Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.