Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potrs011717g33786
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Position
Potrs011717:4004-4123 (+)
119bp
Gene Type
gene
Gene Description (Protein Product)
"DNA-directed RNA polymerases I
Organism
Populus tremuloides
Also AS Potri.003G200450AT3G54490Potri.003G200450.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs041125g25892 DNA-directed RNA polymerases I and III subunit
Potrs017807g20087 DNA-directed RNA polymerases I, II, and III subunit
Potrs038880g24894 DNA-directed RNA polymerases
Regulatory gene
Potrs000033g00079 transcription factor
Potrs000058g00097 basic region leucin zipper
Potrs000093g00070 Ocs element-binding factor 1-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000419 RNA polymerase V complex CC
GO:0000428 DNA-directed RNA polymerase complex CC
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0030880 RNA polymerase complex CC
GO:0032991 protein-containing complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0055029 nuclear DNA-directed RNA polymerase complex CC
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:1902494 catalytic complex CC
GO:1990234 transferase complex CC
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
map03020 RNA polymerase -