PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	Potrs017468g32992 View in Genome Browser
Position	Potrs017468:12444-12563 (-) 119bp
Gene Type	gene
Gene Description (Protein Product)	dUTP metabolic process
Organism	Populus tremuloides
Also AS	Potri.002G261900AT3G46940Potri.002G261900.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Potrs018347g20551 Thymidylate Potrs042969g27027 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides Potrs043009g27062 DNA polymerase
Regulatory gene	Potrs000045g00007 transcription factor Potrs000130g30685 PHD zinc finger Potrs000160g00198 AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000166	nucleotide binding	MF
GO:0000287	magnesium ion binding	MF
GO:0001889	liver development	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004170	dUTP diphosphatase activity	MF
GO:0005102	signaling receptor binding	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005829	cytosol	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006220	pyrimidine nucleotide metabolic process	BP
GO:0006221	pyrimidine nucleotide biosynthetic process	BP
GO:0006226	dUMP biosynthetic process	BP
GO:0006244	pyrimidine nucleotide catabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006260	DNA replication	BP
GO:0006281	DNA repair	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006753	nucleoside phosphate metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009117	nucleotide metabolic process	BP
GO:0009123	nucleoside monophosphate metabolic process	BP
GO:0009124	nucleoside monophosphate biosynthetic process	BP
GO:0009129	pyrimidine nucleoside monophosphate metabolic process	BP
GO:0009130	pyrimidine nucleoside monophosphate biosynthetic process	BP
GO:0009141	nucleoside triphosphate metabolic process	BP
GO:0009143	nucleoside triphosphate catabolic process	BP
GO:0009147	pyrimidine nucleoside triphosphate metabolic process	BP
GO:0009149	pyrimidine nucleoside triphosphate catabolic process	BP
GO:0009157	deoxyribonucleoside monophosphate biosynthetic process	BP
GO:0009162	deoxyribonucleoside monophosphate metabolic process	BP
GO:0009165	nucleotide biosynthetic process	BP
GO:0009166	nucleotide catabolic process	BP
GO:0009176	pyrimidine deoxyribonucleoside monophosphate metabolic process	BP
GO:0009177	pyrimidine deoxyribonucleoside monophosphate biosynthetic process	BP
GO:0009200	deoxyribonucleoside triphosphate metabolic process	BP
GO:0009204	deoxyribonucleoside triphosphate catabolic process	BP
GO:0009211	pyrimidine deoxyribonucleoside triphosphate metabolic process	BP
GO:0009213	pyrimidine deoxyribonucleoside triphosphate catabolic process	BP
GO:0009219	pyrimidine deoxyribonucleotide metabolic process	BP
GO:0009221	pyrimidine deoxyribonucleotide biosynthetic process	BP
GO:0009223	pyrimidine deoxyribonucleotide catabolic process	BP
GO:0009262	deoxyribonucleotide metabolic process	BP
GO:0009263	deoxyribonucleotide biosynthetic process	BP
GO:0009264	deoxyribonucleotide catabolic process	BP
GO:0009265	2'-deoxyribonucleotide biosynthetic process	BP
GO:0009394	2'-deoxyribonucleotide metabolic process	BP
GO:0009966	regulation of signal transduction	BP
GO:0009968	negative regulation of signal transduction	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010469	regulation of signaling receptor activity	BP
GO:0010646	regulation of cell communication	BP
GO:0010648	negative regulation of cell communication	BP
GO:0014070	response to organic cyclic compound	BP
GO:0015949	nucleobase-containing small molecule interconversion	BP
GO:0016043	cellular component organization	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019103	pyrimidine nucleotide binding	MF
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019439	aromatic compound catabolic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0019692	deoxyribose phosphate metabolic process	BP
GO:0022607	cellular component assembly	BP
GO:0023051	regulation of signaling	BP
GO:0023057	negative regulation of signaling	BP
GO:0030545	signaling receptor regulator activity	MF
GO:0030547	signaling receptor inhibitor activity	MF
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032552	deoxyribonucleotide binding	MF
GO:0032556	pyrimidine deoxyribonucleotide binding	MF
GO:0033554	cellular response to stress	BP
GO:0034404	nucleobase-containing small molecule biosynthetic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0034655	nucleobase-containing compound catabolic process	BP
GO:0036094	small molecule binding	MF
GO:0042221	response to chemical	BP
GO:0042802	identical protein binding	MF
GO:0042975	peroxisome proliferator activated receptor binding	MF
GO:0043167	ion binding	MF
GO:0043169	cation binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043393	regulation of protein binding	BP
GO:0043497	regulation of protein heterodimerization activity	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044092	negative regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044270	cellular nitrogen compound catabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046078	dUMP metabolic process	BP
GO:0046080	dUTP metabolic process	BP
GO:0046081	dUTP catabolic process	BP
GO:0046385	deoxyribose phosphate biosynthetic process	BP
GO:0046386	deoxyribose phosphate catabolic process	BP
GO:0046434	organophosphate catabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046700	heterocycle catabolic process	BP
GO:0046872	metal ion binding	MF
GO:0047429	nucleoside triphosphate diphosphatase activity	MF
GO:0048513	animal organ development	BP
GO:0048519	negative regulation of biological process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048585	negative regulation of response to stimulus	BP
GO:0048731	system development	BP
GO:0048732	gland development	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051098	regulation of binding	BP
GO:0051259	protein complex oligomerization	BP
GO:0051260	protein homooligomerization	BP
GO:0051716	cellular response to stimulus	BP
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0061008	hepaticobiliary system development	BP
GO:0065003	protein-containing complex assembly	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070206	protein trimerization	BP
GO:0070207	protein homotrimerization	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0072527	pyrimidine-containing compound metabolic process	BP
GO:0072528	pyrimidine-containing compound biosynthetic process	BP
GO:0072529	pyrimidine-containing compound catabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090407	organophosphate biosynthetic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:0098772	molecular function regulator activity	MF
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901136	carbohydrate derivative catabolic process	BP
GO:1901137	carbohydrate derivative biosynthetic process	BP
GO:1901265	nucleoside phosphate binding	MF
GO:1901292	nucleoside phosphate catabolic process	BP
GO:1901293	nucleoside phosphate biosynthetic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901361	organic cyclic compound catabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:2000272	negative regulation of signaling receptor activity	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00240	Pyrimidine metabolism	-