Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potrs017516g19778
View in Genome Browser
Position
Potrs017516:659-5995 (-)
5336bp
Gene Type
gene
Gene Description (Protein Product)
116 kDa U5 small nuclear ribonucleoprotein
Organism
Populus tremuloides
Also AS Potri.006G190600Potri.018G114900AT1G06220Potri.018G114900.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs040201g25417 Splicing factor 3B subunit
Potrs148414g27386 Small nuclear ribonucleoprotein
Potrs033278g36865 SNW SKI-interacting
Regulatory gene
Potrs000389g00482 Dof domain, zinc finger
Potrs000883g01405 dof zinc finger protein
Potrs000913g29758 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0003006 developmental process involved in reproduction BP
GO:0005575 cellular_component CC
GO:0005618 cell wall CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005681 spliceosomal complex CC
GO:0005684 U2-type spliceosomal complex CC
GO:0005730 nucleolus CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0005911 cell-cell junction CC
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0009506 plasmodesma CC
GO:0009790 embryo development BP
GO:0009791 post-embryonic development BP
GO:0009793 embryo development ending in seed dormancy BP
GO:0009908 flower development BP
GO:0010154 fruit development BP
GO:0015030 Cajal body CC
GO:0016020 membrane CC
GO:0016604 nuclear body CC
GO:0016607 nuclear speck CC
GO:0022414 reproductive process BP
GO:0030054 cell junction CC
GO:0030312 external encapsulating structure CC
GO:0030532 small nuclear ribonucleoprotein complex CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032991 protein-containing complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043900 obsolete regulation of multi-organism process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0045595 regulation of cell differentiation BP
GO:0045694 regulation of embryo sac egg cell differentiation BP
GO:0046540 U4/U6 x U5 tri-snRNP complex CC
GO:0048316 seed development BP
GO:0048367 shoot system development BP
GO:0048437 floral organ development BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0055044 symplast CC
GO:0061458 reproductive system development BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0071007 U2-type catalytic step 2 spliceosome CC
GO:0071013 catalytic step 2 spliceosome CC
GO:0071944 cell periphery CC
GO:0090567 reproductive shoot system development BP
GO:0097525 spliceosomal snRNP complex CC
GO:0097526 spliceosomal tri-snRNP complex CC
GO:0099402 plant organ development BP
GO:0120114 Sm-like protein family complex CC
GO:1902494 catalytic complex CC
GO:1990904 ribonucleoprotein complex CC
GO:2000026 regulation of multicellular organismal development BP
GO:2000241 regulation of reproductive process BP
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.