Basic Information
Gene ID
Potrs020045g22910
Position
Potrs020045:1222-4833 (-)
3611bp
Gene Type
gene
Gene Description (Protein Product)
mRNA-decapping enzyme-like
Organism
Also AS Potri.006G208600AT1G08370Potri.006G208600.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs020180g23258 Enhancer of mRNA-decapping protein
Potrs036192g24198 Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family
Potrs041908g26294 Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family
Regulatory gene
Potrs000144g00119 Transcription factor
Potrs000223g35534 Myb/SANT-like DNA-binding domain
Potrs000360g00529 Myb-like DNA-binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.