Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potrs040434g25544
View in Genome Browser
Position
Potrs040434:12611-18309 (+)
5698bp
Gene Type
gene
Gene Description (Protein Product)
presynapse organization
Organism
Populus tremuloides
Also AS Potri.001G392801AT3G14980Potri.001G392801.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs148139g27403 ATP synthase subunit beta
Potrs148139g27412 Ribulose bisphosphate carboxylase, large chain
Regulatory gene
Potrs000037g00005 methyltransferase At2g41040, chloroplastic-like
Potrs000108g00058 Protein TRANSPARENT TESTA
Potrs000176g35795 C2H2-type zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0000118 histone deacetylase complex CC
GO:0000122 negative regulation of transcription by RNA polymerase II BP
GO:0000228 nuclear chromosome CC
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0001085 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0001103 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003824 catalytic activity MF
GO:0004402 histone acetyltransferase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005694 chromosome CC
GO:0005737 cytoplasm CC
GO:0005813 centrosome CC
GO:0005815 microtubule organizing center CC
GO:0005856 cytoskeleton CC
GO:0005911 cell-cell junction CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006304 DNA modification BP
GO:0006305 DNA alkylation BP
GO:0006306 DNA methylation BP
GO:0006325 chromatin organization BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006464 protein modification process BP
GO:0006473 protein acetylation BP
GO:0006475 internal protein amino acid acetylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0008080 N-acetyltransferase activity MF
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009506 plasmodesma CC
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010385 double-stranded methylated DNA binding MF
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0015630 microtubule cytoskeleton CC
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016407 acetyltransferase activity MF
GO:0016410 N-acyltransferase activity MF
GO:0016458 obsolete gene silencing BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016573 histone acetylation BP
GO:0016581 NuRD complex CC
GO:0016740 transferase activity MF
GO:0016746 acyltransferase activity MF
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups MF
GO:0017053 transcription repressor complex CC
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0018393 internal peptidyl-lysine acetylation BP
GO:0018394 peptidyl-lysine acetylation BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019899 enzyme binding MF
GO:0030054 cell junction CC
GO:0031047 RNA-mediated gene silencing BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032259 methylation BP
GO:0032991 protein-containing complex CC
GO:0032993 protein-DNA complex CC
GO:0034212 peptide N-acetyltransferase activity MF
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0036211 protein modification process BP
GO:0042393 histone binding MF
GO:0042826 histone deacetylase binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0043414 macromolecule methylation BP
GO:0043543 protein acylation BP
GO:0043966 histone H3 acetylation BP
GO:0043971 histone H3-K18 acetylation BP
GO:0043972 histone H3-K23 acetylation BP
GO:0044030 regulation of DNA methylation BP
GO:0044154 histone H3-K14 acetylation BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0044728 obsolete DNA methylation or demethylation BP
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050808 synapse organization BP
GO:0051052 regulation of DNA metabolic process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0055044 symplast CC
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061733 peptide-lysine-N-acetyltransferase activity MF
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070491 DNA-binding transcription factor binding MF
GO:0070603 SWI/SNF superfamily-type complex CC
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072553 terminal button organization BP
GO:0080090 regulation of primary metabolic process BP
GO:0080188 gene silencing by RNA-directed DNA methylation BP
GO:0090304 nucleic acid metabolic process BP
GO:0090545 CHD-type complex CC
GO:0090568 transcription repressor complex CC
GO:0097159 organic cyclic compound binding MF
GO:0099172 presynapse organization BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1902494 catalytic complex CC
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1904949 ATPase complex CC
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP