Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potrs040527g28912
View in Genome Browser
Position
Potrs040527:897-2143 (+)
1246bp
Gene Type
gene
Gene Description (Protein Product)
Responsible for synthesis of pseudouridine from uracil
Organism
Populus tremuloides
Also AS Potri.015G101300AT5G51140Potri.015G101300.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs042953g27020 SpoU rRNA Methylase family
Potrs042159g26453 Casein Kinase
Potrs149071g32525 Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1
Regulatory gene
Potrs000130g30685 PHD zinc finger
Potrs000185g00177 NAC domain-containing protein
Potrs000241g00339 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0000154 rRNA modification BP
GO:0000455 enzyme-directed rRNA pseudouridine synthesis BP
GO:0001522 pseudouridine synthesis BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006364 rRNA processing BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009451 RNA modification BP
GO:0009982 pseudouridine synthase activity MF
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016070 RNA metabolic process BP
GO:0016072 rRNA metabolic process BP
GO:0016853 isomerase activity MF
GO:0016866 intramolecular transferase activity MF
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0031118 rRNA pseudouridine synthesis BP
GO:0034470 ncRNA processing BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0042254 ribosome biogenesis BP
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP