Basic Information
Gene ID
Potrs040717g25691
Position
Potrs040717:5823-9086 (+)
3263bp
Gene Type
gene
Gene Description (Protein Product)
CHD3-type chromatin-remodeling factor
Organism
Also AS Potri.006G262200AT2G25170Potri.006G262200.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs146124g27240 Belongs to the histone deacetylase family. HD Type 1 subfamily
Potrs042043g26386 High mobility group B protein
Potrs042239g26524 zinc finger CCCH domain-containing protein
Regulatory gene
Potrs000130g30685 PHD zinc finger
Potrs000241g00339 transcription factor
Potrs000313g34139 Myb-related protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
GO Term Description GO Category
GO:0001101 response to acid chemical BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006325 chromatin organization BP
GO:0006338 chromatin remodeling BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006996 organelle organization BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008283 cell population proliferation BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009733 response to auxin BP
GO:0009735 response to cytokinin BP
GO:0009736 cytokinin-activated signaling pathway BP
GO:0009739 response to gibberellin BP
GO:0009755 hormone-mediated signaling pathway BP
GO:0009787 regulation of abscisic acid-activated signaling pathway BP
GO:0009788 negative regulation of abscisic acid-activated signaling pathway BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0016043 cellular component organization BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0022622 root system development BP
GO:0023051 regulation of signaling BP
GO:0023052 signaling BP
GO:0023057 negative regulation of signaling BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032870 cellular response to hormone stimulus BP
GO:0033993 response to lipid BP
GO:0042221 response to chemical BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0048364 root development BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0048580 regulation of post-embryonic development BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0051716 cellular response to stimulus BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071310 cellular response to organic substance BP
GO:0071368 cellular response to cytokinin stimulus BP
GO:0071495 cellular response to endogenous stimulus BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0099402 plant organ development BP
GO:1901363 heterocyclic compound binding MF
GO:1901419 regulation of response to alcohol BP
GO:1901420 negative regulation of response to alcohol BP
GO:1901700 response to oxygen-containing compound BP
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1905957 regulation of cellular response to alcohol BP
GO:1905958 negative regulation of cellular response to alcohol BP
GO:2000023 regulation of lateral root development BP
GO:2000026 regulation of multicellular organismal development BP
GO:2000069 regulation of post-embryonic root development BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2000280 regulation of root development BP
GO:2001141 regulation of RNA biosynthetic process BP