Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potrs041414g29882
View in Genome Browser
Position
Potrs041414:9708-11396 (+)
1688bp
Gene Type
gene
Gene Description (Protein Product)
E3 ubiquitin-protein ligase
Organism
Populus tremuloides
Also AS Potri.008G215200AT2G39100Potri.008G215200.v4.1

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs041611g28964 OBERON-like protein
Potrs041420g26058 Protein of unknown function, DUF604
Potrs144807g28206 Fanconi anemia group F protein (FANCF)
Regulatory gene
Potrs000389g00482 Dof domain, zinc finger
Potrs000883g01405 dof zinc finger protein
Potrs000913g29758 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0000151 ubiquitin ligase complex CC
GO:0000209 protein polyubiquitination BP
GO:0000922 spindle pole CC
GO:0000930 gamma-tubulin complex CC
GO:0001654 eye development BP
GO:0001754 eye photoreceptor cell differentiation BP
GO:0003407 neural retina development BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003823 antigen binding MF
GO:0003824 catalytic activity MF
GO:0004842 ubiquitin-protein transferase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0005814 centriole CC
GO:0005815 microtubule organizing center CC
GO:0005819 spindle CC
GO:0005856 cytoskeleton CC
GO:0005929 cilium CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006351 DNA-templated transcription BP
GO:0006464 protein modification process BP
GO:0006508 proteolysis BP
GO:0006511 ubiquitin-dependent protein catabolic process BP
GO:0006513 protein monoubiquitination BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006915 apoptotic process BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007275 multicellular organism development BP
GO:0007399 nervous system development BP
GO:0007423 sensory organ development BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008219 cell death BP
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009887 animal organ morphogenesis BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010498 proteasomal protein catabolic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010842 retina layer formation BP
GO:0010941 regulation of cell death BP
GO:0012501 programmed cell death BP
GO:0015630 microtubule cytoskeleton CC
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016567 protein ubiquitination BP
GO:0016604 nuclear body CC
GO:0016605 PML body CC
GO:0016607 nuclear speck CC
GO:0016740 transferase activity MF
GO:0016925 protein sumoylation BP
GO:0018130 heterocycle biosynthetic process BP
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0019222 regulation of metabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019538 protein metabolic process BP
GO:0019787 ubiquitin-like protein transferase activity MF
GO:0019789 SUMO transferase activity MF
GO:0019899 enzyme binding MF
GO:0019941 modification-dependent protein catabolic process BP
GO:0022008 neurogenesis BP
GO:0023052 signaling BP
GO:0030154 cell differentiation BP
GO:0030163 protein catabolic process BP
GO:0030182 neuron differentiation BP
GO:0030496 midbody CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031396 regulation of protein ubiquitination BP
GO:0031398 positive regulation of protein ubiquitination BP
GO:0031399 regulation of protein modification process BP
GO:0031401 positive regulation of protein modification process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032268 regulation of protein metabolic process BP
GO:0032270 positive regulation of protein metabolic process BP
GO:0032391 photoreceptor connecting cilium CC
GO:0032446 protein modification by small protein conjugation BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032507 maintenance of protein location in cell BP
GO:0032774 RNA biosynthetic process BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0033365 protein localization to organelle BP
GO:0033554 cellular response to stress BP
GO:0034504 protein localization to nucleus BP
GO:0034613 protein localization BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0035556 intracellular signal transduction BP
GO:0035845 photoreceptor cell outer segment organization BP
GO:0035869 ciliary transition zone CC
GO:0036064 ciliary basal body CC
GO:0036211 protein modification process BP
GO:0042461 photoreceptor cell development BP
GO:0042462 eye photoreceptor cell development BP
GO:0042670 retinal cone cell differentiation BP
GO:0042981 regulation of apoptotic process BP
GO:0042995 cell projection CC
GO:0043005 neuron projection CC
GO:0043010 camera-type eye development BP
GO:0043066 negative regulation of apoptotic process BP
GO:0043067 regulation of programmed cell death BP
GO:0043069 negative regulation of programmed cell death BP
GO:0043085 positive regulation of catalytic activity BP
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0043632 modification-dependent macromolecule catabolic process BP
GO:0044093 positive regulation of molecular function BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044441 obsolete ciliary part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044450 obsolete microtubule organizing center part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044463 obsolete cell projection part CC
GO:0044464 obsolete cell part CC
GO:0044547 DNA topoisomerase binding MF
GO:0045185 maintenance of protein location BP
GO:0046483 heterocycle metabolic process BP
GO:0046530 photoreceptor cell differentiation BP
GO:0046548 retinal rod cell development BP
GO:0046549 retinal cone cell development BP
GO:0048468 cell development BP
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048592 eye morphogenesis BP
GO:0048593 camera-type eye morphogenesis BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048666 neuron development BP
GO:0048699 generation of neurons BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051179 localization BP
GO:0051235 maintenance of location BP
GO:0051246 regulation of protein metabolic process BP
GO:0051247 positive regulation of protein metabolic process BP
GO:0051338 regulation of transferase activity BP
GO:0051347 positive regulation of transferase activity BP
GO:0051438 regulation of ubiquitin-protein transferase activity BP
GO:0051443 positive regulation of ubiquitin-protein transferase activity BP
GO:0051457 maintenance of protein location in nucleus BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0051641 cellular localization BP
GO:0051651 maintenance of location in cell BP
GO:0051716 cellular response to stimulus BP
GO:0060041 retina development in camera-type eye BP
GO:0060042 retina morphogenesis in camera-type eye BP
GO:0060219 camera-type eye photoreceptor cell differentiation BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060548 negative regulation of cell death BP
GO:0061630 ubiquitin protein ligase activity MF
GO:0061659 ubiquitin-like protein ligase activity MF
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0070727 cellular macromolecule localization BP
GO:0070936 protein K48-linked ubiquitination BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072595 maintenance of protein localization in organelle BP
GO:0080090 regulation of primary metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0090596 sensory organ morphogenesis BP
GO:0097159 organic cyclic compound binding MF
GO:0097190 apoptotic signaling pathway BP
GO:0097193 intrinsic apoptotic signaling pathway BP
GO:0097458 obsolete neuron part CC
GO:0097659 nucleic acid-templated transcription BP
GO:0097730 non-motile cilium CC
GO:0097731 9+0 non-motile cilium CC
GO:0097733 photoreceptor cell cilium CC
GO:0120025 plasma membrane bounded cell projection CC
GO:0120038 obsolete plasma membrane bounded cell projection part CC
GO:0140096 catalytic activity, acting on a protein MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1902494 catalytic complex CC
GO:1903320 regulation of protein modification by small protein conjugation or removal BP
GO:1903322 positive regulation of protein modification by small protein conjugation or removal BP
GO:1990234 transferase complex CC