Basic Information
Gene ID
Potrs041428g26057
Position
Potrs041428:2818-21128 (-)
18310bp
Gene Type
gene
Gene Description (Protein Product)
CCR4-NOT transcription complex subunit
Organism
Also AS Potri.014G058800AT1G02080Potri.014G058800.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs147124g27299 Carbon catabolite repressor protein 4 homolog
Potrs043056g27105 ABC transporter I family member
Potrs127259g31548 CRM domain-containing protein
Regulatory gene
Potrs000033g00079 transcription factor
Potrs000058g00097 basic region leucin zipper
Potrs000093g00070 Ocs element-binding factor 1-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.