Basic Information
Gene ID
Potrs042217g26536
Position
Potrs042217:11252-15136 (+)
3884bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor 3B subunit
Organism
Also AS Potri.007G028300AT2G18510Potri.007G028300.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs148414g27386 Small nuclear ribonucleoprotein
Potrs042320g26569 cell division cycle 5-like
Potrs042911g27014 U2 small nuclear ribonucleoprotein
Regulatory gene
Potrs000037g00005 methyltransferase At2g41040, chloroplastic-like
Potrs000108g00058 Protein TRANSPARENT TESTA
Potrs000176g35795 C2H2-type zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.