Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Potrs042254g26531
View in Genome Browser
Position
Potrs042254:539-1624 (+)
1085bp
Gene Type
gene
Gene Description (Protein Product)
Helicase associated domain (HA2) Add an annotation
Organism
Populus tremuloides
Also AS

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potrs148414g27386 Small nuclear ribonucleoprotein
Potrs149598g27500 Pre-mRNA-splicing factor
Potrs042833g26979 Nuclear cap-binding protein subunit
Regulatory gene
Potrs000185g00177 NAC domain-containing protein
Potrs000309g00473 NAC transcription factor
Potrs000362g00484 NAC domain-containing protein

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.