PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Basic Information

Gene ID	Potri.001G069948 View in Genome Browser
Position	Chr01:5276905-5280185 (+) 3280bp
Gene Type	gene
Gene Description (Protein Product)	ZINC FINGER protein
Organism	Populus trichocarpa
Also AS	Potri.001G069948AT3G50700Potri.001G069948.v4.1

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Potri.013G162100 One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and or dimerization Potri.013G026500 Mog1 PsbP DUF1795-like photosystem II reaction center PsbP family protein Potri.003G067501 May help in the organization of the PsaE and PsaF subunits
Regulatory gene	Potri.001G005100 transcription repressor Potri.001G013600 Bromodomain-containing protein Potri.001G035800 dnaJ homolog subfamily C member
Target gene	Potri.001G000800 Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family Potri.001G001100 Belongs to the expansin family Potri.001G001700 Glucosidase 2 subunit

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

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