PPGR - Gene Detail

Basic Information

Gene ID	Potri.013G162000 View in Genome Browser
Position	Chr13:15567473-15567592 (+) 119bp
Gene Type	gene
Gene Description (Protein Product)	"This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O
Organism	Populus trichocarpa
Also AS	Potri.013G162000Potri.013G162000.v4.1

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Potri.019G063101 The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Potri.013G162100 One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and or dimerization

Potri.019G047540 Photosynthetic reaction centre protein

Regulatory gene

Potri.001G018400 AP2-like ethylene-responsive transcription factor

Potri.001G041500 AP2-like ethylene-responsive transcription factor

Potri.001G066200 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

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