Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Basic Information
Gene ID
Potri.015G082500
View in Genome Browser
Position
Chr15:10764957-10769348 (-)
4391bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the histone deacetylase family. HD Type 1 subfamily
Organism
Populus trichocarpa
Also AS Potri.015G082500AT5G63110Potri.015G082500.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potri.018G068200 WD-40 repeat-containing protein
Potri.018G138000 Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Potri.018G093000 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
Regulatory gene
Potri.001G053500 GATA transcription factor
Potri.001G086400 Dof zinc finger protein
Potri.001G151700 GATA transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)