Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Basic Information
Gene ID
Potri.016G029200
View in Genome Browser
Position
Chr16:1616331-1625898 (+)
9567bp
Gene Type
gene
Gene Description (Protein Product)
Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
Organism
Populus trichocarpa
Also AS Potri.016G029200AT1G65440Potri.016G029200.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Potri.017G078500 Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II
Potri.016G138100 Transcription elongation factor
Potri.018G107700 Omega-6 fatty acid desaturase
Regulatory gene
Potri.001G047500 ZINC FINGER protein
Potri.001G058200 MADS-box protein
Potri.001G058400 Agamous-like MADS-box protein AGL9 homolog

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)