Basic Information
Gene ID
gene-GBA52_000153
Position
CM035466.1:1365587-1366072 (+)
485bp
Gene Type
gene
Gene Description (Protein Product)
Involved in the biogenesis of the 60S ribosomal subunit
Organism
Also AS MD16G1277600AT1G50920PRUPE_1G572400

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-GBA52_028885 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
gene-GBA52_028887 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
gene-GBA52_012230 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Regulatory gene
gene-GBA52_000033 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
gene-GBA52_000125 transcription factor
gene-GBA52_000292 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0016020 membrane CC
KEGG Term Name Description
map03008 Ribosome biogenesis in eukaryotes Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.