PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-GBA52_000442 View in Genome Browser
Position	CM035466.1:3913431-3916847 (-) 3416bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the SNF7 family
Organism	Prunus armeniaca
Also AS	MD08G1216900AT3G10640PRUPE_1G550400

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-GBA52_027920 Vacuolar protein sorting-associated protein VTA1 homolog gene-GBA52_012389 Belongs to the SNF7 family gene-GBA52_022755 Belongs to the SNF7 family
Regulatory gene	gene-GBA52_002041 Protein BASIC PENTACYSTEINE6-like gene-GBA52_002344 Protein BASIC PENTACYSTEINE2-like gene-GBA52_026930 Protein BASIC PENTACYSTEINE4-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005768	endosome	CC
GO:0005770	late endosome	CC
GO:0005771	multivesicular body	CC
GO:0012505	endomembrane system	CC
GO:0031410	cytoplasmic vesicle	CC
GO:0031982	vesicle	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0097708	intracellular vesicle	CC

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.