Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-GBA52_012012
View in Genome Browser
Position
CM035468.1:25460348-25464300 (-)
3952bp
Gene Type
gene
Gene Description (Protein Product)
Phosphoglucan phosphatase LSF1
Organism
Prunus armeniaca
Also AS MD09G1032300AT3G01510PRUPE_3G285700

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-GBA52_022674 Protein phosphatase 2C and cyclic nucleotide-binding kinase domain-containing
gene-GBA52_018704 Sucrose nonfermenting 4-like
gene-GBA52_021515 CBL-interacting serine threonine-protein kinase
Regulatory gene
gene-GBA52_000431 transcription regulator recruiting activity
gene-GBA52_000715 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
gene-GBA52_001288 Myb-related protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000272 polysaccharide catabolic process BP
GO:0001871 obsolete pattern binding MF
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005783 endoplasmic reticulum CC
GO:0005789 endoplasmic reticulum membrane CC
GO:0005791 rough endoplasmic reticulum CC
GO:0005975 carbohydrate metabolic process BP
GO:0005976 polysaccharide metabolic process BP
GO:0005977 glycogen metabolic process BP
GO:0005982 starch metabolic process BP
GO:0005983 starch catabolic process BP
GO:0006073 cellular glucan metabolic process BP
GO:0006091 generation of precursor metabolites and energy BP
GO:0006112 energy reserve metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009251 glucan catabolic process BP
GO:0009507 chloroplast CC
GO:0009532 plastid stroma CC
GO:0009536 plastid CC
GO:0009569 chloroplast starch grain CC
GO:0009570 chloroplast stroma CC
GO:0009987 cellular process BP
GO:0012505 endomembrane system CC
GO:0015980 energy derivation by oxidation of organic compounds BP
GO:0016020 membrane CC
GO:0016052 carbohydrate catabolic process BP
GO:0016311 dephosphorylation BP
GO:0016787 hydrolase activity MF
GO:0016788 hydrolase activity, acting on ester bonds MF
GO:0016791 phosphatase activity MF
GO:0019203 carbohydrate phosphatase activity MF
GO:0030246 carbohydrate binding MF
GO:0030247 polysaccharide binding MF
GO:0030867 rough endoplasmic reticulum membrane CC
GO:0031090 organelle membrane CC
GO:0031984 organelle subcompartment CC
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0042578 phosphoric ester hydrolase activity MF
GO:0043036 starch grain CC
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044042 glucan metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044247 cellular polysaccharide catabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044262 cellular carbohydrate metabolic process BP
GO:0044264 cellular polysaccharide metabolic process BP
GO:0044275 cellular carbohydrate catabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044432 obsolete endoplasmic reticulum part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046838 phosphorylated carbohydrate dephosphorylation BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0071704 organic substance metabolic process BP
GO:0098552 side of membrane CC
GO:0098554 cytoplasmic side of endoplasmic reticulum membrane CC
GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane CC
GO:0098562 cytoplasmic side of membrane CC
GO:0098588 bounding membrane of organelle CC
GO:0098827 endoplasmic reticulum subcompartment CC
GO:1901575 organic substance catabolic process BP
GO:2001069 glycogen binding MF