PPGR - Gene Detail

Basic Information

Gene ID	gene-GBA52_014819 View in Genome Browser
Position	CM035467.1:22498781-22500301 (+) 1520bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the oxygen-dependent FAD-linked oxidoreductase family
Organism	Prunus armeniaca
Also AS	MD00G1103700AT5G44400PRUPE_4G257400

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-GBA52_023545 Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

gene-GBA52_028212 Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

gene-GBA52_020638 Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Regulatory gene

gene-GBA52_001701 RWP-RK domain

gene-GBA52_001870 dof zinc finger protein

gene-GBA52_002902 Cyclic dof factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00940	Phenylpropanoid biosynthesis	Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.