Basic Information
Gene ID
gene-GBA52_019761
Position
CM035465.1:11331842-11341888 (+)
10046bp
Gene Type
gene
Gene Description (Protein Product)
U4 U6 small nuclear ribonucleoprotein
Organism
Also AS MD02G1186000AT1G60170PRUPE_5G061600

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-GBA52_028611 U5 small nuclear ribonucleoprotein 200 kDa
gene-GBA52_021942 U5 small nuclear ribonucleoprotein 200 kDa
gene-GBA52_021941 U5 small nuclear ribonucleoprotein 200 kDa
Regulatory gene
gene-GBA52_000026 Zinc-finger homeodomain protein
gene-GBA52_000535 Encoded by
gene-GBA52_000638 Zinc-finger homeodomain protein

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.