Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-GBA52_020758
View in Genome Browser
Position
CM035465.1:22753167-22759731 (-)
6564bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the histone deacetylase family. HD Type 1 subfamily
Organism
Prunus armeniaca
Also AS MD11G1159400AT3G44680PRUPE_6G122500

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-GBA52_022868 WD-40 repeat-containing protein
gene-GBA52_021858 Histone H3
gene-GBA52_021733 Histone H3
Regulatory gene
gene-GBA52_000125 transcription factor
gene-GBA52_000267 Ethylene-responsive transcription factor SHINE
gene-GBA52_000292 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0006325 chromatin organization BP
GO:0006464 protein modification process BP
GO:0006476 protein deacetylation BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009987 cellular process BP
GO:0010029 regulation of seed germination BP
GO:0010187 negative regulation of seed germination BP
GO:0016043 cellular component organization BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016575 histone deacetylation BP
GO:0019538 protein metabolic process BP
GO:0035601 protein deacylation BP
GO:0036211 protein modification process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0043565 sequence-specific DNA binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0048519 negative regulation of biological process BP
GO:0048580 regulation of post-embryonic development BP
GO:0048581 negative regulation of post-embryonic development BP
GO:0048831 regulation of shoot system development BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0051093 negative regulation of developmental process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051241 negative regulation of multicellular organismal process BP
GO:0051276 chromosome organization BP
GO:0065007 biological regulation BP
GO:0070932 histone H3 deacetylation BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0097159 organic cyclic compound binding MF
GO:0098732 macromolecule deacylation BP
GO:1900055 regulation of leaf senescence BP
GO:1900140 regulation of seedling development BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1990619 histone H3-K9 deacetylation BP
GO:2000024 regulation of leaf development BP
GO:2000026 regulation of multicellular organismal development BP