PPGR - Gene Detail

Basic Information

Gene ID	gene-GBA52_020843 View in Genome Browser
Position	CM035465.1:23499029-23506120 (-) 7091bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the argonaute family
Organism	Prunus armeniaca
Also AS	MD03G1130600AT2G27880PRUPE_6G115400

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-GBA52_028720 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

gene-GBA52_028321 Belongs to the helicase family. Dicer subfamily

gene-GBA52_028320 Belongs to the helicase family. Dicer subfamily

Regulatory gene

gene-GBA52_000431 transcription regulator recruiting activity

gene-GBA52_000715 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

gene-GBA52_001288 Myb-related protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0002252	immune effector process	BP
GO:0002376	immune system process	BP
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006950	response to stress	BP
GO:0006952	defense response	BP
GO:0006955	immune response	BP
GO:0008150	biological_process	BP
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009615	response to virus	BP
GO:0009616	RNAi-mediated antiviral immune response	BP
GO:0009814	defense response to other organism	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010468	regulation of gene expression	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010608	post-transcriptional regulation of gene expression	BP
GO:0010629	negative regulation of gene expression	BP
GO:0016441	post-transcriptional gene silencing	BP
GO:0016458	obsolete gene silencing	BP
GO:0019222	regulation of metabolic process	BP
GO:0035821	modulation of process of another organism	BP
GO:0040029	epigenetic regulation of gene expression	BP
GO:0043207	response to external biotic stimulus	BP
GO:0044003	modulation by symbiont of host process	BP
GO:0044403	biological process involved in symbiotic interaction	BP
GO:0044419	biological process involved in interspecies interaction between organisms	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0045087	innate immune response	BP
GO:0048519	negative regulation of biological process	BP
GO:0050789	regulation of biological process	BP
GO:0050896	response to stimulus	BP
GO:0051607	defense response to virus	BP
GO:0051701	biological process involved in interaction with host	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0051817	obsolete modulation of process of other organism involved in symbiotic interaction	BP
GO:0052018	obsolete modulation by symbiont of RNA levels in host	BP
GO:0052249	obsolete modulation of RNA levels in other organism involved in symbiotic interaction	BP
GO:0060145	RNAi-mediated antiviral immune response	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0098542	defense response to other organism	BP
GO:0098586	cellular response to virus	BP