PPGR - Gene Detail

Basic Information

Gene ID	gene-GBA52_021556 View in Genome Browser
Position	CM035465.1:29162625-29165687 (-) 3062bp
Gene Type	gene
Gene Description (Protein Product)	KH domain-containing protein
Organism	Prunus armeniaca
Also AS	MD03G1047700AT3G08620PRUPE_6G038700

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-GBA52_028218 Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region

gene-GBA52_024827 WW domain

gene-GBA52_023715 Splicing factor U2af small subunit

Regulatory gene

gene-GBA52_000026 Zinc-finger homeodomain protein

gene-GBA52_000122 ZINC FINGER protein

gene-GBA52_000429 Zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003723	RNA binding	MF
GO:0003729	mRNA binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0008150	biological_process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0048519	negative regulation of biological process	BP
GO:0048577	negative regulation of short-day photoperiodism, flowering	BP
GO:0048579	negative regulation of long-day photoperiodism, flowering	BP
GO:0048580	regulation of post-embryonic development	BP
GO:0048581	negative regulation of post-embryonic development	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048585	negative regulation of response to stimulus	BP
GO:0048586	regulation of long-day photoperiodism, flowering	BP
GO:0048587	regulation of short-day photoperiodism, flowering	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0051093	negative regulation of developmental process	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051241	negative regulation of multicellular organismal process	BP
GO:0065007	biological regulation	BP
GO:0097159	organic cyclic compound binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:2000026	regulation of multicellular organismal development	BP
GO:2000028	regulation of photoperiodism, flowering	BP
GO:2000241	regulation of reproductive process	BP
GO:2000242	negative regulation of reproductive process	BP