Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-GBA52_021598
View in Genome Browser
Position
CM035465.1:29498158-29498652 (-)
494bp
Gene Type
gene
Gene Description (Protein Product)
Photosystem I reaction center subunit V
Organism
Prunus armeniaca
Also AS MD03G1042800AT1G55670PRUPE_6G035200

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-GBA52_024418 PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin
gene-GBA52_027560 The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
gene-GBA52_024417 PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin
Regulatory gene
gene-GBA52_000033 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
gene-GBA52_000122 ZINC FINGER protein
gene-GBA52_000429 Zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006091 generation of precursor metabolites and energy BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006732 obsolete coenzyme metabolic process BP
GO:0006733 obsolete oxidoreduction coenzyme metabolic process BP
GO:0006739 NADP metabolic process BP
GO:0006740 NADPH regeneration BP
GO:0006753 nucleoside phosphate metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009117 nucleotide metabolic process BP
GO:0009507 chloroplast CC
GO:0009521 photosystem CC
GO:0009522 photosystem I CC
GO:0009526 plastid envelope CC
GO:0009534 chloroplast thylakoid CC
GO:0009535 chloroplast thylakoid membrane CC
GO:0009536 plastid CC
GO:0009579 thylakoid CC
GO:0009767 photosynthetic electron transport chain BP
GO:0009773 photosynthetic electron transport in photosystem I BP
GO:0009780 photosynthetic NADP+ reduction BP
GO:0009941 chloroplast envelope CC
GO:0009987 cellular process BP
GO:0010109 regulation of photosynthesis BP
GO:0015979 photosynthesis BP
GO:0016020 membrane CC
GO:0019222 regulation of metabolic process BP
GO:0019362 pyridine nucleotide metabolic process BP
GO:0019637 organophosphate metabolic process BP
GO:0019684 photosynthesis, light reaction BP
GO:0022900 electron transport chain BP
GO:0030093 chloroplast photosystem I CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031647 regulation of protein stability BP
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0031976 plastid thylakoid CC
GO:0031984 organelle subcompartment CC
GO:0032991 protein-containing complex CC
GO:0034357 photosynthetic membrane CC
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0042548 regulation of photosynthesis, light reaction BP
GO:0042550 photosystem I stabilization BP
GO:0042651 thylakoid membrane CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043467 regulation of generation of precursor metabolites and energy BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044436 obsolete thylakoid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0046496 nicotinamide nucleotide metabolic process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050821 protein stabilization BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0055035 plastid thylakoid membrane CC
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0071704 organic substance metabolic process BP
GO:0072524 pyridine-containing compound metabolic process BP
GO:0098796 membrane protein complex CC
GO:0098807 chloroplast thylakoid membrane protein complex CC
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00195 Photosynthesis Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.