Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Basic Information
Gene ID
gene-GBA52_021614
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Position
CM035465.1:29634494-29636457 (-)
1963bp
Gene Type
gene
Gene Description (Protein Product)
KH domain-containing protein
Organism
Prunus armeniaca
Also AS MD11G1042300AT5G56140PRUPE_6G033400

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-GBA52_028218 Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region
gene-GBA52_023681 DEAD-box ATP-dependent RNA helicase
gene-GBA52_024827 WW domain
Regulatory gene
gene-GBA52_000014 NAC domain-containing protein
gene-GBA52_000316 WRKY transcription factor
gene-GBA52_000358 NAC transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)