PPGR - Gene Detail

Basic Information

Gene ID	gene-GBA52_023424 View in Genome Browser
Position	CM035472.1:8190842-8196579 (-) 5737bp
Gene Type	gene
Gene Description (Protein Product)	Splicing factor U2af large subunit
Organism	Prunus armeniaca
Also AS	MD02G1151300AT1G60900PRUPE_7G151700

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-GBA52_023715 Splicing factor U2af small subunit

gene-GBA52_028152 Small nuclear ribonucleoprotein SM

gene-GBA52_023833 Small nuclear ribonucleoprotein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000243	commitment complex	CC
GO:0000375	RNA splicing, via transesterification reactions	BP
GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	BP
GO:0000398	mRNA splicing, via spliceosome	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003727	single-stranded RNA binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005681	spliceosomal complex	CC
GO:0005684	U2-type spliceosomal complex	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006396	RNA processing	BP
GO:0006397	mRNA processing	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006952	defense response	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008187	poly-pyrimidine tract binding	MF
GO:0008380	RNA splicing	BP
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009617	response to bacterium	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0016070	RNA metabolic process	BP
GO:0016071	mRNA metabolic process	BP
GO:0016604	nuclear body	CC
GO:0016607	nuclear speck	CC
GO:0030628	pre-mRNA 3'-splice site binding	MF
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032991	protein-containing complex	CC
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0036002	pre-mRNA binding	MF
GO:0042742	defense response to bacterium	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0050896	response to stimulus	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071004	U2-type prespliceosome	CC
GO:0071010	prespliceosome	CC
GO:0071704	organic substance metabolic process	BP
GO:0089701	U2AF complex	CC
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0098542	defense response to other organism	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.