Basic Information
Gene ID
gene-GBA52_026186
Position
CM035470.1:3342918-3343127 (+)
209bp
Gene Type
gene
Gene Description (Protein Product)
Regulator of Vps4 activity in the MVB pathway
Organism
Also AS MD10G1043300AT1G34220PRUPE_8G049000

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-GBA52_027920 Vacuolar protein sorting-associated protein VTA1 homolog
gene-GBA52_026888 Fatty acid amide
gene-GBA52_028321 Belongs to the helicase family. Dicer subfamily
Regulatory gene
gene-GBA52_001701 RWP-RK domain
gene-GBA52_001870 dof zinc finger protein
gene-GBA52_002902 Cyclic dof factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.