PPGR - Gene Detail

Basic Information

Gene ID	gene-GBA52_027043 View in Genome Browser
Position	CM035470.1:12918284-12924858 (+) 6574bp
Gene Type	gene
Gene Description (Protein Product)	methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits
Organism	Prunus armeniaca
Also AS	MD10G1073000AT4G25730PRUPE_8G094400

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-GBA52_028885 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

gene-GBA52_028886 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

gene-GBA52_028887 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000154	rRNA modification	BP
GO:0000460	maturation of 5.8S rRNA	BP
GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	BP
GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	BP
GO:0000470	maturation of LSU-rRNA	BP
GO:0001510	RNA methylation	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005730	nucleolus	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008168	methyltransferase activity	MF
GO:0008171	O-methyltransferase activity	MF
GO:0008173	RNA methyltransferase activity	MF
GO:0008649	rRNA methyltransferase activity	MF
GO:0008650	rRNA (uridine-2'-O-)-methyltransferase activity	MF
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	MF
GO:0009451	RNA modification	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0016070	RNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0016435	rRNA (guanine) methyltransferase activity	MF
GO:0016436	rRNA (uridine) methyltransferase activity	MF
GO:0016740	transferase activity	MF
GO:0016741	transferase activity, transferring one-carbon groups	MF
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0030684	preribosome	CC
GO:0030687	preribosome, large subunit precursor	CC
GO:0031167	rRNA methylation	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032259	methylation	BP
GO:0032991	protein-containing complex	CC
GO:0034470	ncRNA processing	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0042254	ribosome biogenesis	BP
GO:0042273	ribosomal large subunit biogenesis	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0043414	macromolecule methylation	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0140098	catalytic activity, acting on RNA	MF
GO:0140102	catalytic activity, acting on a rRNA	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1990904	ribonucleoprotein complex	CC