Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-GBA52_027569
View in Genome Browser
Position
CM035470.1:17749589-17751442 (+)
1853bp
Gene Type
gene
Gene Description (Protein Product)
histone deacetylase
Organism
Prunus armeniaca
Also AS MD05G1097100AT2G14825PRUPE_8G141700

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-GBA52_029156 Histone-lysine n-methyltransferase
gene-GBA52_029155 Histone-lysine n-methyltransferase
gene-GBA52_027739 WD-40 repeat-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000118 histone deacetylase complex CC
GO:0000302 response to reactive oxygen species BP
GO:0000976 transcription cis-regulatory region binding MF
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding MF
GO:0000987 cis-regulatory region sequence-specific DNA binding MF
GO:0001012 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0001067 transcription regulatory region nucleic acid binding MF
GO:0001932 regulation of protein phosphorylation BP
GO:0001934 positive regulation of protein phosphorylation BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003824 catalytic activity MF
GO:0004407 histone deacetylase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005770 late endosome CC
GO:0005771 multivesicular body CC
GO:0005829 cytosol CC
GO:0005856 cytoskeleton CC
GO:0005874 microtubule CC
GO:0005875 microtubule associated complex CC
GO:0005886 plasma membrane CC
GO:0005901 caveola CC
GO:0006325 chromatin organization BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006464 protein modification process BP
GO:0006476 protein deacetylation BP
GO:0006508 proteolysis BP
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006950 response to stress BP
GO:0006979 response to oxidative stress BP
GO:0006996 organelle organization BP
GO:0008013 beta-catenin binding MF
GO:0008017 microtubule binding MF
GO:0008092 cytoskeletal protein binding MF
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009636 response to toxic substance BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009896 positive regulation of catabolic process BP
GO:0009966 regulation of signal transduction BP
GO:0009967 positive regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010035 response to inorganic substance BP
GO:0010310 regulation of hydrogen peroxide metabolic process BP
GO:0010468 regulation of gene expression BP
GO:0010469 regulation of signaling receptor activity BP
GO:0010506 regulation of autophagy BP
GO:0010508 positive regulation of autophagy BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010557 positive regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010562 positive regulation of phosphorus metabolic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0010632 regulation of epithelial cell migration BP
GO:0010634 positive regulation of epithelial cell migration BP
GO:0010638 positive regulation of organelle organization BP
GO:0010646 regulation of cell communication BP
GO:0010647 positive regulation of cell communication BP
GO:0010727 negative regulation of hydrogen peroxide metabolic process BP
GO:0010821 regulation of mitochondrion organization BP
GO:0010822 positive regulation of mitochondrion organization BP
GO:0010869 obsolete regulation of receptor biosynthetic process BP
GO:0010870 obsolete positive regulation of receptor biosynthetic process BP
GO:0010941 regulation of cell death BP
GO:0010942 positive regulation of cell death BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015630 microtubule cytoskeleton CC
GO:0015631 tubulin binding MF
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016234 inclusion body CC
GO:0016235 aggresome CC
GO:0016239 positive regulation of macroautophagy BP
GO:0016241 regulation of macroautophagy BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016575 histone deacetylation BP
GO:0016787 hydrolase activity MF
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds MF
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides MF
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0019213 deacetylase activity MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019899 enzyme binding MF
GO:0022607 cellular component assembly BP
GO:0023051 regulation of signaling BP
GO:0023056 positive regulation of signaling BP
GO:0030030 cell projection organization BP
GO:0030031 cell projection assembly BP
GO:0030162 regulation of proteolysis BP
GO:0030163 protein catabolic process BP
GO:0030334 regulation of cell migration BP
GO:0030335 positive regulation of cell migration BP
GO:0030424 axon CC
GO:0030425 dendrite CC
GO:0031072 heat shock protein binding MF
GO:0031252 cell leading edge CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031331 positive regulation of cellular catabolic process BP
GO:0031334 positive regulation of protein-containing complex assembly BP
GO:0031399 regulation of protein modification process BP
GO:0031401 positive regulation of protein modification process BP
GO:0031410 cytoplasmic vesicle CC
GO:0031593 polyubiquitin modification-dependent protein binding MF
GO:0031625 ubiquitin protein ligase binding MF
GO:0031647 regulation of protein stability BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0031982 vesicle CC
GO:0032268 regulation of protein metabolic process BP
GO:0032269 negative regulation of protein metabolic process BP
GO:0032270 positive regulation of protein metabolic process BP
GO:0032418 lysosome localization BP
GO:0032459 regulation of protein oligomerization BP
GO:0032461 positive regulation of protein oligomerization BP
GO:0032879 regulation of localization BP
GO:0032886 regulation of microtubule-based process BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0033043 regulation of organelle organization BP
GO:0033135 regulation of peptidyl-serine phosphorylation BP
GO:0033138 positive regulation of peptidyl-serine phosphorylation BP
GO:0033143 regulation of intracellular steroid hormone receptor signaling pathway BP
GO:0033554 cellular response to stress BP
GO:0033558 protein lysine deacetylase activity MF
GO:0034599 cellular response to oxidative stress BP
GO:0034613 protein localization BP
GO:0034614 cellular response to reactive oxygen species BP
GO:0034983 peptidyl-lysine deacetylation BP
GO:0035601 protein deacylation BP
GO:0035690 cellular response to xenobiotic stimulus BP
GO:0035966 response to topologically incorrect protein BP
GO:0035967 cellular response to topologically incorrect protein BP
GO:0036211 protein modification process BP
GO:0036477 somatodendritic compartment CC
GO:0040012 regulation of locomotion BP
GO:0040017 positive regulation of locomotion BP
GO:0040029 epigenetic regulation of gene expression BP
GO:0042221 response to chemical BP
GO:0042325 regulation of phosphorylation BP
GO:0042327 positive regulation of phosphorylation BP
GO:0042493 response to xenobiotic stimulus BP
GO:0042542 response to hydrogen peroxide BP
GO:0042826 histone deacetylase binding MF
GO:0042886 amide transport BP
GO:0042903 tubulin deacetylase activity MF
GO:0042995 cell projection CC
GO:0043005 neuron projection CC
GO:0043014 alpha-tubulin binding MF
GO:0043025 neuronal cell body CC
GO:0043067 regulation of programmed cell death BP
GO:0043068 positive regulation of programmed cell death BP
GO:0043086 negative regulation of catalytic activity BP
GO:0043170 macromolecule metabolic process BP
GO:0043204 perikaryon CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043242 negative regulation of protein-containing complex disassembly BP
GO:0043244 regulation of protein-containing complex disassembly BP
GO:0043254 regulation of protein-containing complex assembly BP
GO:0043412 macromolecule modification BP
GO:0043565 sequence-specific DNA binding MF
GO:0044085 cellular component biogenesis BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044089 positive regulation of cellular component biogenesis BP
GO:0044092 negative regulation of molecular function BP
GO:0044212 transcription cis-regulatory region binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044297 cell body CC
GO:0044389 ubiquitin-like protein ligase binding MF
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044428 obsolete nuclear part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044463 obsolete cell projection part CC
GO:0044464 obsolete cell part CC
GO:0044782 cilium organization BP
GO:0044853 plasma membrane raft CC
GO:0044877 protein-containing complex binding MF
GO:0045121 membrane raft CC
GO:0045184 establishment of protein localization BP
GO:0045861 negative regulation of proteolysis BP
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0045937 positive regulation of phosphate metabolic process BP
GO:0046677 response to antibiotic BP
GO:0046907 intracellular transport BP
GO:0048156 tau protein binding MF
GO:0048471 perinuclear region of cytoplasm CC
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051128 regulation of cellular component organization BP
GO:0051129 negative regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051179 localization BP
GO:0051193 obsolete regulation of cofactor metabolic process BP
GO:0051195 obsolete negative regulation of cofactor metabolic process BP
GO:0051234 establishment of localization BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051240 positive regulation of multicellular organismal process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051247 positive regulation of protein metabolic process BP
GO:0051248 negative regulation of protein metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051270 obsolete regulation of cellular component movement BP
GO:0051272 obsolete positive regulation of cellular component movement BP
GO:0051276 chromosome organization BP
GO:0051341 regulation of oxidoreductase activity BP
GO:0051354 negative regulation of oxidoreductase activity BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0051716 cellular response to stimulus BP
GO:0051787 misfolded protein binding MF
GO:0051788 response to misfolded protein BP
GO:0051879 Hsp90 protein binding MF
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060271 cilium assembly BP
GO:0060632 regulation of microtubule-based movement BP
GO:0060765 regulation of androgen receptor signaling pathway BP
GO:0061734 parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0070301 cellular response to hydrogen peroxide BP
GO:0070727 cellular macromolecule localization BP
GO:0070840 dynein complex binding MF
GO:0070841 inclusion body assembly BP
GO:0070842 aggresome assembly BP
GO:0070843 misfolded protein transport BP
GO:0070844 polyubiquitinated protein transport BP
GO:0070845 polyubiquitinated misfolded protein transport BP
GO:0070846 Hsp90 deacetylation BP
GO:0070848 response to growth factor BP
GO:0070887 cellular response to chemical stimulus BP
GO:0070925 organelle assembly BP
GO:0071236 cellular response to antibiotic BP
GO:0071310 cellular response to organic substance BP
GO:0071702 organic substance transport BP
GO:0071704 organic substance metabolic process BP
GO:0071705 nitrogen compound transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0080135 regulation of cellular response to stress BP
GO:0090034 regulation of chaperone-mediated protein complex assembly BP
GO:0090035 positive regulation of chaperone-mediated protein complex assembly BP
GO:0090042 tubulin deacetylation BP
GO:0097159 organic cyclic compound binding MF
GO:0097237 cellular response to toxic substance BP
GO:0097447 dendritic tree CC
GO:0097458 obsolete neuron part CC
GO:0097708 intracellular vesicle CC
GO:0098589 membrane CC
GO:0098590 plasma membrane region CC
GO:0098732 macromolecule deacylation BP
GO:0098779 positive regulation of mitophagy in response to mitochondrial depolarization BP
GO:0098780 response to mitochondrial depolarisation BP
GO:0098805 membrane CC
GO:0098857 membrane microdomain CC
GO:0099080 supramolecular complex CC
GO:0099081 supramolecular polymer CC
GO:0099512 supramolecular fiber CC
GO:0099513 polymeric cytoskeletal fiber CC
GO:0120025 plasma membrane bounded cell projection CC
GO:0120031 plasma membrane bounded cell projection assembly BP
GO:0120036 plasma membrane bounded cell projection organization BP
GO:0120038 obsolete plasma membrane bounded cell projection part CC
GO:0140030 modification-dependent protein binding MF
GO:0140096 catalytic activity, acting on a protein MF
GO:1900407 regulation of cellular response to oxidative stress BP
GO:1900409 positive regulation of cellular response to oxidative stress BP
GO:1901031 regulation of response to reactive oxygen species BP
GO:1901033 positive regulation of response to reactive oxygen species BP
GO:1901298 regulation of hydrogen peroxide-mediated programmed cell death BP
GO:1901300 positive regulation of hydrogen peroxide-mediated programmed cell death BP
GO:1901363 heterocyclic compound binding MF
GO:1901524 regulation of mitophagy BP
GO:1901526 positive regulation of mitophagy BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901700 response to oxygen-containing compound BP
GO:1901701 cellular response to oxygen-containing compound BP
GO:1902494 catalytic complex CC
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1902882 regulation of response to oxidative stress BP
GO:1902884 positive regulation of response to oxidative stress BP
GO:1903146 regulation of autophagy of mitochondrion BP
GO:1903201 regulation of oxidative stress-induced cell death BP
GO:1903205 regulation of hydrogen peroxide-induced cell death BP
GO:1903209 positive regulation of oxidative stress-induced cell death BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1903599 positive regulation of autophagy of mitochondrion BP
GO:1904923 regulation of autophagy of mitochondrion in response to mitochondrial depolarization BP
GO:1904925 positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization BP
GO:1905206 positive regulation of hydrogen peroxide-induced cell death BP
GO:1990837 sequence-specific double-stranded DNA binding MF
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2000145 regulation of cell motility BP
GO:2000147 positive regulation of cell motility BP
GO:2000377 regulation of reactive oxygen species metabolic process BP
GO:2000378 negative regulation of reactive oxygen species metabolic process BP
GO:2001023 regulation of response to drug BP
GO:2001025 positive regulation of response to drug BP
GO:2001038 regulation of cellular response to drug BP
GO:2001040 positive regulation of cellular response to drug BP
GO:2001141 regulation of RNA biosynthetic process BP