PPGR - Gene Detail

Gene ID	gene-GBA52_027843 View in Genome Browser
Position	CM035470.1:19685994-19688689 (-) 2695bp
Gene Type	gene
Gene Description (Protein Product)	Isocitrate dehydrogenase NAD regulatory subunit 1
Organism	Prunus armeniaca
Also AS	MD10G1138600AT4G35260PRUPE_8G177400

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)

gene-GBA52_028388 omega-amidase activity

gene-GBA52_028604 Belongs to the peptidase M16 family

gene-GBA52_028927 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0006082	organic acid metabolic process	BP
GO:0006091	generation of precursor metabolites and energy	BP
GO:0006099	tricarboxylic acid cycle	BP
GO:0006101	citrate metabolic process	BP
GO:0006102	isocitrate metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008270	zinc ion binding	MF
GO:0009060	aerobic respiration	BP
GO:0009987	cellular process	BP
GO:0015980	energy derivation by oxidation of organic compounds	BP
GO:0016999	antibiotic metabolic process	BP
GO:0017144	xenobiotic metabolic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0043167	ion binding	MF
GO:0043169	cation binding	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0045333	cellular respiration	BP
GO:0046872	metal ion binding	MF
GO:0046914	transition metal ion binding	MF
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:0072350	tricarboxylic acid metabolic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00020	Citrate cycle (TCA cycle)	The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].