PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-GBA52_028716 View in Genome Browser
Position	JADDKH010000020.1:118470-124066 (-) 5596bp
Gene Type	gene
Gene Description (Protein Product)	negative regulation of mRNA metabolic process
Organism	Prunus armeniaca
Also AS	MD15G1247300AT2G44710PRUPE_7G166500

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-GBA52_029186 K homology RNA-binding domain

gene-GBA52_028931 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

gene-GBA52_028937 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0002376	immune system process	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003727	single-stranded RNA binding	MF
GO:0003729	mRNA binding	MF
GO:0003730	mRNA 3'-UTR binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005681	spliceosomal complex	CC
GO:0005737	cytoplasm	CC
GO:0006417	regulation of translation	BP
GO:0006950	response to stress	BP
GO:0006952	defense response	BP
GO:0006955	immune response	BP
GO:0007623	circadian rhythm	BP
GO:0008143	poly(A) binding	MF
GO:0008150	biological_process	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009890	negative regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009894	regulation of catabolic process	BP
GO:0009895	negative regulation of catabolic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010558	negative regulation of macromolecule biosynthetic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010608	post-transcriptional regulation of gene expression	BP
GO:0010628	positive regulation of gene expression	BP
GO:0010629	negative regulation of gene expression	BP
GO:0016020	membrane	CC
GO:0017148	negative regulation of translation	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0030425	dendrite	CC
GO:0031323	regulation of cellular metabolic process	BP
GO:0031324	negative regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031327	negative regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0031329	regulation of cellular catabolic process	BP
GO:0031330	negative regulation of cellular catabolic process	BP
GO:0032268	regulation of protein metabolic process	BP
GO:0032269	negative regulation of protein metabolic process	BP
GO:0032270	positive regulation of protein metabolic process	BP
GO:0032991	protein-containing complex	CC
GO:0034097	response to cytokine	BP
GO:0034248	regulation of amide metabolic process	BP
GO:0034249	negative regulation of amide metabolic process	BP
GO:0034250	positive regulation of amide metabolic process	BP
GO:0034341	response to type II interferon	BP
GO:0036477	somatodendritic compartment	CC
GO:0042221	response to chemical	BP
GO:0042995	cell projection	CC
GO:0043005	neuron projection	CC
GO:0043025	neuronal cell body	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043487	regulation of RNA stability	BP
GO:0043488	regulation of mRNA stability	BP
GO:0043489	RNA stabilization	BP
GO:0044297	cell body	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044463	obsolete cell projection part	CC
GO:0044464	obsolete cell part	CC
GO:0045087	innate immune response	BP
GO:0045727	positive regulation of translation	BP
GO:0045934	negative regulation of nucleobase-containing compound metabolic process	BP
GO:0048027	mRNA 5'-UTR binding	MF
GO:0048255	mRNA stabilization	BP
GO:0048511	rhythmic process	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051172	negative regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051247	positive regulation of protein metabolic process	BP
GO:0051248	negative regulation of protein metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051253	negative regulation of RNA metabolic process	BP
GO:0051716	cellular response to stimulus	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061013	regulation of mRNA catabolic process	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070717	poly-purine tract binding	MF
GO:0070887	cellular response to chemical stimulus	BP
GO:0070934	CRD-mediated mRNA stabilization	BP
GO:0070937	CRD-mediated mRNA stability complex	CC
GO:0071013	catalytic step 2 spliceosome	CC
GO:0071204	histone pre-mRNA 3'end processing complex	CC
GO:0071310	cellular response to organic substance	BP
GO:0071345	cellular response to cytokine stimulus	BP
GO:0071346	cellular response to type II interferon	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090365	regulation of mRNA modification	BP
GO:0090367	negative regulation of mRNA modification	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097447	dendritic tree	CC
GO:0097452	GAIT complex	CC
GO:0097458	obsolete neuron part	CC
GO:0120025	plasma membrane bounded cell projection	CC
GO:0120038	obsolete plasma membrane bounded cell projection part	CC
GO:1901363	heterocyclic compound binding	MF
GO:1902369	negative regulation of RNA catabolic process	BP
GO:1902373	negative regulation of mRNA catabolic process	BP
GO:1902494	catalytic complex	CC
GO:1903311	regulation of mRNA metabolic process	BP
GO:1903312	negative regulation of mRNA metabolic process	BP
GO:1990635	proximal dendrite	CC
GO:1990904	ribonucleoprotein complex	CC
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000113	negative regulation of cellular macromolecule biosynthetic process	BP