Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_03649.g
Position
jcf7190000395666:10293-11075 (-)
782bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the peptidase T1A family
Organism
Pseudotsuga menziesii
Also AS AT3G14290

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_48234.g to Saccharomyces cerevisiae RPN1 (YHR027C)
PSME_07923.g Belongs to the AAA ATPase family
PSME_04130.g to Saccharomyces cerevisiae RPN9 (YDR427W)

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000502 proteasome complex CC
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005839 proteasome core complex CC
GO:0006508 proteolysis BP
GO:0006511 ubiquitin-dependent protein catabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007088 regulation of mitotic nuclear division BP
GO:0007346 regulation of mitotic cell cycle BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009896 positive regulation of catabolic process BP
GO:0009987 cellular process BP
GO:0010498 proteasomal protein catabolic process BP
GO:0010499 proteasomal ubiquitin-independent protein catabolic process BP
GO:0010564 regulation of cell cycle process BP
GO:0010638 positive regulation of organelle organization BP
GO:0010965 regulation of mitotic sister chromatid separation BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0019538 protein metabolic process BP
GO:0019773 proteasome core complex, alpha-subunit complex CC
GO:0019941 modification-dependent protein catabolic process BP
GO:0030071 regulation of mitotic metaphase/anaphase transition BP
GO:0030163 protein catabolic process BP
GO:0031331 positive regulation of cellular catabolic process BP
GO:0031597 cytosolic proteasome complex CC
GO:0032270 positive regulation of protein metabolic process BP
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process BP
GO:0032991 protein-containing complex CC
GO:0033043 regulation of organelle organization BP
GO:0033044 regulation of chromosome organization BP
GO:0033045 regulation of sister chromatid segregation BP
GO:0033047 regulation of mitotic sister chromatid segregation BP
GO:0034515 proteasome storage granule CC
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043632 modification-dependent macromolecule catabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044445 obsolete cytosolic part CC
GO:0044464 obsolete cell part CC
GO:0045732 positive regulation of protein catabolic process BP
GO:0045787 positive regulation of cell cycle BP
GO:0045840 positive regulation of mitotic nuclear division BP
GO:0045842 positive regulation of mitotic metaphase/anaphase transition BP
GO:0045862 positive regulation of proteolysis BP
GO:0045931 positive regulation of mitotic cell cycle BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051128 regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051247 positive regulation of protein metabolic process BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0051726 regulation of cell cycle BP
GO:0051781 positive regulation of cell division BP
GO:0051783 regulation of nuclear division BP
GO:0051785 positive regulation of nuclear division BP
GO:0051983 regulation of chromosome segregation BP
GO:0051984 positive regulation of chromosome segregation BP
GO:0062033 positive regulation of mitotic sister chromatid segregation BP
GO:0065007 biological regulation BP
GO:0071704 organic substance metabolic process BP
GO:0090068 positive regulation of cell cycle process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901800 positive regulation of proteasomal protein catabolic process BP
GO:1901970 positive regulation of mitotic sister chromatid separation BP
GO:1901987 regulation of cell cycle phase transition BP
GO:1901989 positive regulation of cell cycle phase transition BP
GO:1901990 regulation of mitotic cell cycle phase transition BP
GO:1901992 positive regulation of mitotic cell cycle phase transition BP
GO:1902099 regulation of metaphase/anaphase transition of cell cycle BP
GO:1902101 positive regulation of metaphase/anaphase transition of cell cycle BP
GO:1902494 catalytic complex CC
GO:1903052 positive regulation of proteolysis involved in protein catabolic process BP
GO:1903364 positive regulation of protein catabolic process BP
GO:1905368 peptidase complex CC
GO:1905369 endopeptidase complex CC
GO:1905818 regulation of chromosome separation BP
GO:1905820 positive regulation of chromosome separation BP
GO:2001252 positive regulation of chromosome organization BP
KEGG Term Name Description
map03050 Proteasome The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.