Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_05378.g
Position
jcf7190000000995:775220-776089 (+)
869bp
Gene Type
gene
Gene Description (Protein Product)
linker histone H1 and H5 family
Organism
Pseudotsuga menziesii
Also AS AT1G72740

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_51274.g C-terminal binding protein
PSME_30692.g zinc finger CCCH domain-containing protein
PSME_45439.g single fertilization
Regulatory gene
PSME_00595.g Mini zinc finger protein
PSME_00955.g Mini zinc finger protein
PSME_01407.g Mini zinc finger protein
Target gene
PSME_00001.g SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.
PSME_00003.g Senescence regulator
PSME_00004.g Domain of unknown function (DUF4283)

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000785 chromatin CC
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003691 double-stranded telomeric DNA binding MF
GO:0003697 single-stranded DNA binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005694 chromosome CC
GO:0005730 nucleolus CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0042162 telomeric DNA binding MF
GO:0042802 identical protein binding MF
GO:0042803 protein homodimerization activity MF
GO:0043047 single-stranded telomeric DNA binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043565 sequence-specific DNA binding MF
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046983 protein dimerization activity MF
GO:0070013 intracellular organelle lumen CC
GO:0097159 organic cyclic compound binding MF
GO:0098847 sequence-specific single stranded DNA binding MF
GO:1901363 heterocyclic compound binding MF