PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	PSME_07194.g
Position	jcf7190000379672:5609-6184 (-) 575bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the small GTPase superfamily. Rho family
Organism	Pseudotsuga menziesii
Also AS	AT4G35020

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PSME_19609.g guanosine nucleotide diphosphate dissociation inhibitor

PSME_40288.g Guanosine nucleotide diphosphate dissociation inhibitor

PSME_09543.g receptor-like protein kinase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000131	incipient cellular bud site	CC
GO:0000133	polarisome	CC
GO:0000166	nucleotide binding	MF
GO:0000322	storage vacuole	CC
GO:0000323	lytic vacuole	CC
GO:0000324	fungal-type vacuole	CC
GO:0000329	fungal-type vacuole membrane	CC
GO:0000746	obsolete conjugation	BP
GO:0000747	conjugation with cellular fusion	BP
GO:0000749	response to pheromone triggering conjugation with cellular fusion	BP
GO:0000750	pheromone-dependent signal transduction involved in conjugation with cellular fusion	BP
GO:0000753	cell morphogenesis involved in conjugation with cellular fusion	BP
GO:0000767	obsolete cell morphogenesis involved in conjugation	BP
GO:0000902	cell morphogenesis	BP
GO:0000920	septum digestion after cytokinesis	BP
GO:0001403	invasive growth in response to glucose limitation	BP
GO:0001411	hyphal tip	CC
GO:0001558	regulation of cell growth	BP
GO:0001882	nucleoside binding	MF
GO:0001883	purine nucleoside binding	MF
GO:0002831	regulation of response to biotic stimulus	BP
GO:0002833	positive regulation of response to biotic stimulus	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0003924	GTPase activity	MF
GO:0005488	binding	MF
GO:0005525	GTP binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005635	nuclear envelope	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0005856	cytoskeleton	CC
GO:0005886	plasma membrane	CC
GO:0005933	cellular bud	CC
GO:0005934	cellular bud tip	CC
GO:0005935	cellular bud neck	CC
GO:0005937	mating projection	CC
GO:0005938	cell cortex	CC
GO:0005940	septin ring	CC
GO:0006109	regulation of carbohydrate metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007088	regulation of mitotic nuclear division	BP
GO:0007096	regulation of exit from mitosis	BP
GO:0007114	cell budding	BP
GO:0007117	budding cell bud growth	BP
GO:0007118	budding cell apical bud growth	BP
GO:0007119	budding cell isotropic bud growth	BP
GO:0007154	cell communication	BP
GO:0007163	establishment or maintenance of cell polarity	BP
GO:0007165	signal transduction	BP
GO:0007186	G protein-coupled receptor signaling pathway	BP
GO:0007264	small GTPase mediated signal transduction	BP
GO:0007265	Ras protein signal transduction	BP
GO:0007266	Rho protein signal transduction	BP
GO:0007346	regulation of mitotic cell cycle	BP
GO:0008150	biological_process	BP
GO:0008360	regulation of cell shape	BP
GO:0009405	obsolete pathogenesis	BP
GO:0009607	response to biotic stimulus	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009898	cytoplasmic side of plasma membrane	CC
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010564	regulation of cell cycle process	BP
GO:0010570	regulation of filamentous growth	BP
GO:0010675	regulation of cellular carbohydrate metabolic process	BP
GO:0010962	regulation of glucan biosynthetic process	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0017076	purine nucleotide binding	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0017157	regulation of exocytosis	BP
GO:0019001	guanyl nucleotide binding	MF
GO:0019222	regulation of metabolic process	BP
GO:0019236	response to pheromone	BP
GO:0019953	sexual reproduction	BP
GO:0019954	asexual reproduction	BP
GO:0022414	reproductive process	BP
GO:0022603	regulation of anatomical structure morphogenesis	BP
GO:0022604	regulation of cell morphogenesis	BP
GO:0023052	signaling	BP
GO:0030010	establishment of cell polarity	BP
GO:0030029	actin filament-based process	BP
GO:0030036	actin cytoskeleton organization	BP
GO:0030133	transport vesicle	CC
GO:0030307	positive regulation of cell growth	BP
GO:0030427	site of polarized growth	CC
GO:0030428	cell septum	CC
GO:0030447	filamentous growth	BP
GO:0030448	hyphal growth	BP
GO:0030950	establishment or maintenance of actin cytoskeleton polarity	BP
GO:0030952	establishment or maintenance of cytoskeleton polarity	BP
GO:0031090	organelle membrane	CC
GO:0031106	septin ring organization	BP
GO:0031136	obsolete positive regulation of conjugation	BP
GO:0031137	regulation of conjugation with cellular fusion	BP
GO:0031139	positive regulation of conjugation with cellular fusion	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031344	regulation of cell projection organization	BP
GO:0031383	regulation of mating projection assembly	BP
GO:0031384	regulation of initiation of mating projection growth	BP
GO:0031410	cytoplasmic vesicle	CC
GO:0031521	spitzenkorper	CC
GO:0031562	hyphal tip polarisome	CC
GO:0031965	nuclear membrane	CC
GO:0031967	organelle envelope	CC
GO:0031975	envelope	CC
GO:0031982	vesicle	CC
GO:0032005	signal transduction involved in positive regulation of conjugation with cellular fusion	BP
GO:0032153	cell division site	CC
GO:0032154	cleavage furrow	CC
GO:0032155	obsolete cell division site part	CC
GO:0032156	septin cytoskeleton	CC
GO:0032185	septin cytoskeleton organization	BP
GO:0032386	regulation of intracellular transport	BP
GO:0032465	regulation of cytokinesis	BP
GO:0032488	Cdc42 protein signal transduction	BP
GO:0032502	developmental process	BP
GO:0032505	reproduction of a single-celled organism	BP
GO:0032549	ribonucleoside binding	MF
GO:0032550	purine ribonucleoside binding	MF
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032561	guanyl ribonucleotide binding	MF
GO:0032878	regulation of establishment or maintenance of cell polarity	BP
GO:0032879	regulation of localization	BP
GO:0032880	regulation of protein localization	BP
GO:0032881	regulation of polysaccharide metabolic process	BP
GO:0032885	regulation of polysaccharide biosynthetic process	BP
GO:0032889	regulation of vacuole fusion, non-autophagic	BP
GO:0032950	regulation of beta-glucan metabolic process	BP
GO:0032951	regulation of beta-glucan biosynthetic process	BP
GO:0032954	regulation of cytokinetic process	BP
GO:0032955	regulation of division septum assembly	BP
GO:0032989	cellular component morphogenesis	BP
GO:0032991	protein-containing complex	CC
GO:0033043	regulation of organelle organization	BP
GO:0033157	regulation of intracellular protein transport	BP
GO:0035556	intracellular signal transduction	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0035838	growing cell tip	CC
GO:0036094	small molecule binding	MF
GO:0036180	filamentous growth of a population of unicellular organisms in response to biotic stimulus	BP
GO:0036187	cell growth mode switching, budding to filamentous	BP
GO:0036267	invasive filamentous growth	BP
GO:0040007	growth	BP
GO:0040008	regulation of growth	BP
GO:0042221	response to chemical	BP
GO:0042995	cell projection	CC
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043255	regulation of carbohydrate biosynthetic process	BP
GO:0043332	mating projection tip	CC
GO:0043900	obsolete regulation of multi-organism process	BP
GO:0043902	obsolete positive regulation of multi-organism process	BP
GO:0044087	regulation of cellular component biogenesis	BP
GO:0044088	regulation of vacuole organization	BP
GO:0044182	filamentous growth of a population of unicellular organisms	BP
GO:0044419	biological process involved in interspecies interaction between organisms	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044448	obsolete cell cortex part	CC
GO:0044459	obsolete plasma membrane part	CC
GO:0044463	obsolete cell projection part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0044764	obsolete multi-organism cellular process	BP
GO:0045921	positive regulation of exocytosis	BP
GO:0045927	positive regulation of growth	BP
GO:0046999	obsolete regulation of conjugation	BP
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048584	positive regulation of response to stimulus	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051046	regulation of secretion	BP
GO:0051047	positive regulation of secretion	BP
GO:0051049	regulation of transport	BP
GO:0051050	positive regulation of transport	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051223	regulation of protein transport	BP
GO:0051285	cell cortex of cell tip	CC
GO:0051286	cell tip	CC
GO:0051301	cell division	BP
GO:0051302	regulation of cell division	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051716	cellular response to stimulus	BP
GO:0051726	regulation of cell cycle	BP
GO:0051783	regulation of nuclear division	BP
GO:0060178	regulation of exocyst localization	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060341	regulation of cellular localization	BP
GO:0060491	regulation of cell projection assembly	BP
GO:0060627	regulation of vesicle-mediated transport	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070201	regulation of establishment of protein localization	BP
GO:0070382	exocytic vesicle	CC
GO:0070783	growth of unicellular organism as a thread of attached cells	BP
GO:0070784	regulation of growth of unicellular organism as a thread of attached cells	BP
GO:0070786	positive regulation of growth of unicellular organism as a thread of attached cells	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0071310	cellular response to organic substance	BP
GO:0071444	cellular response to pheromone	BP
GO:0071521	Cdc42 GTPase complex	CC
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0071963	establishment or maintenance of cell polarity regulating cell shape	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090033	positive regulation of filamentous growth	BP
GO:0090087	regulation of peptide transport	BP
GO:0090726	cortical dynamic polarity patch	CC
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:0097574	lateral part of cell	CC
GO:0097575	lateral cell cortex	CC
GO:0097708	intracellular vesicle	CC
GO:0098552	side of membrane	CC
GO:0098562	cytoplasmic side of membrane	CC
GO:0098588	bounding membrane of organelle	CC
GO:0098590	plasma membrane region	CC
GO:0098805	membrane	CC
GO:0098852	lytic vacuole membrane	CC
GO:0099503	secretory vesicle	CC
GO:0099568	cytoplasmic region	CC
GO:0099738	cell cortex region	CC
GO:0120025	plasma membrane bounded cell projection	CC
GO:0120032	regulation of plasma membrane bounded cell projection assembly	BP
GO:0120035	regulation of plasma membrane bounded cell projection organization	BP
GO:0120038	obsolete plasma membrane bounded cell projection part	CC
GO:1900428	regulation of filamentous growth of a population of unicellular organisms	BP
GO:1900430	positive regulation of filamentous growth of a population of unicellular organisms	BP
GO:1900443	regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus	BP
GO:1900445	positive regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus	BP
GO:1901265	nucleoside phosphate binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901891	regulation of cell septum assembly	BP
GO:1901987	regulation of cell cycle phase transition	BP
GO:1901990	regulation of mitotic cell cycle phase transition	BP
GO:1902412	regulation of mitotic cytokinesis	BP
GO:1902716	cell cortex of growing cell tip	CC
GO:1903436	regulation of mitotic cytokinetic process	BP
GO:1903530	regulation of secretion by cell	BP
GO:1903532	positive regulation of secretion by cell	BP
GO:1903827	regulation of protein localization	BP
GO:1905708	regulation of cell morphogenesis involved in conjugation with cellular fusion	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000220	regulation of pseudohyphal growth	BP
GO:2000222	positive regulation of pseudohyphal growth	BP
GO:2000241	regulation of reproductive process	BP
GO:2000243	positive regulation of reproductive process	BP
GO:2000769	regulation of establishment or maintenance of cell polarity regulating cell shape	BP

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.