Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_07458.g
Position
jcf7190000354654:27115-28647 (+)
1532bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the TPP enzyme family
Organism
Pseudotsuga menziesii
Also AS AT5G01330

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_08092.g to Saccharomyces cerevisiae THI7 (YLR237W)
PSME_08299.g Belongs to the glutathione peroxidase family
PSME_32073.g belongs to the protein kinase superfamily

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000947 amino acid catabolic process to alcohol via Ehrlich pathway BP
GO:0000949 aromatic amino acid family catabolic process to alcohol via Ehrlich pathway BP
GO:0000955 amino acid catabolic process via Ehrlich pathway BP
GO:0001085 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0001102 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006066 alcohol metabolic process BP
GO:0006067 ethanol metabolic process BP
GO:0006082 organic acid metabolic process BP
GO:0006090 pyruvate metabolic process BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006520 amino acid metabolic process BP
GO:0006558 L-phenylalanine metabolic process BP
GO:0006559 L-phenylalanine catabolic process BP
GO:0006568 tryptophan metabolic process BP
GO:0006569 tryptophan catabolic process BP
GO:0006576 biogenic amine metabolic process BP
GO:0006586 indolalkylamine metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009058 biosynthetic process BP
GO:0009063 amino acid catabolic process BP
GO:0009072 aromatic amino acid metabolic process BP
GO:0009074 aromatic amino acid family catabolic process BP
GO:0009308 amine metabolic process BP
GO:0009310 amine catabolic process BP
GO:0009889 regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010557 positive regulation of macromolecule biosynthetic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010628 positive regulation of gene expression BP
GO:0016054 organic acid catabolic process BP
GO:0016999 antibiotic metabolic process BP
GO:0017144 xenobiotic metabolic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019439 aromatic compound catabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0030656 regulation of vitamin metabolic process BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0032787 monocarboxylic acid metabolic process BP
GO:0033613 DNA-binding transcription factor binding MF
GO:0034308 primary alcohol metabolic process BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0042402 cellular biogenic amine catabolic process BP
GO:0042430 indole-containing compound metabolic process BP
GO:0042436 indole-containing compound catabolic process BP
GO:0042737 xenobiotic catabolic process BP
GO:0042762 regulation of sulfur metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044106 amine metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044270 cellular nitrogen compound catabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044282 small molecule catabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0045893 positive regulation of DNA-templated transcription BP
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0045944 positive regulation of transcription by RNA polymerase II BP
GO:0046136 positive regulation of vitamin metabolic process BP
GO:0046165 alcohol biosynthetic process BP
GO:0046218 obsolete indolalkylamine catabolic process BP
GO:0046395 carboxylic acid catabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046700 heterocycle catabolic process BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051176 positive regulation of sulfur metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0062012 regulation of small molecule metabolic process BP
GO:0062013 positive regulation of small molecule metabolic process BP
GO:0065007 biological regulation BP
GO:0070623 regulation of thiamine biosynthetic process BP
GO:0071704 organic substance metabolic process BP
GO:0080090 regulation of primary metabolic process BP
GO:0090180 positive regulation of thiamine biosynthetic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901361 organic cyclic compound catabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1901606 alpha-amino acid catabolic process BP
GO:1901615 organic hydroxy compound metabolic process BP
GO:1901617 organic hydroxy compound biosynthetic process BP
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process BP
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process BP
GO:1902680 positive regulation of RNA biosynthetic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903508 positive regulation of nucleic acid-templated transcription BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00010 Glycolysis / Gluconeogenesis Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which often corresponds to operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].