PPGR - Gene Detail

Basic Information

Gene ID	PSME_08936.g
Position	jcf7190000224211:38109-39338 (-) 1229bp
Gene Type	gene
Gene Description (Protein Product)	to Saccharomyces cerevisiae LCB3 (YJL134W) and YSR3 (YKR053C)
Organism	Pseudotsuga menziesii
Also AS	AT3G58490

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

PSME_09696.g Ectonucleotide pyrophosphatase phosphodiesterase

PSME_50638.g Sphingolipid delta(4)-desaturase DES1-like

PSME_12617.g Belongs to the sterol desaturase family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005789	endoplasmic reticulum membrane	CC
GO:0006629	lipid metabolic process	BP
GO:0006643	membrane lipid metabolic process	BP
GO:0006665	sphingolipid metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008610	lipid biosynthetic process	BP
GO:0009058	biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0016311	dephosphorylation	BP
GO:0016787	hydrolase activity	MF
GO:0016788	hydrolase activity, acting on ester bonds	MF
GO:0016791	phosphatase activity	MF
GO:0019722	calcium-mediated signaling	BP
GO:0019932	second-messenger-mediated signaling	BP
GO:0023052	signaling	BP
GO:0030148	sphingolipid biosynthetic process	BP
GO:0030258	lipid modification	BP
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0031984	organelle subcompartment	CC
GO:0035556	intracellular signal transduction	BP
GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	CC
GO:0042392	sphingosine-1-phosphate phosphatase activity	MF
GO:0042578	phosphoric ester hydrolase activity	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044432	obsolete endoplasmic reticulum part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046467	membrane lipid biosynthetic process	BP
GO:0046839	phospholipid dephosphorylation	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051716	cellular response to stimulus	BP
GO:0065007	biological regulation	BP
GO:0071704	organic substance metabolic process	BP
GO:0098827	endoplasmic reticulum subcompartment	CC
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map01100	Metabolic pathways	-
map00600	Sphingolipid metabolism	-
map00600	Sphingolipid metabolism	-