Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_09307.g
Position
jcf7190000303634:15191-16126 (-)
935bp
Gene Type
gene
Gene Description (Protein Product)
Serine threonine-protein phosphatase
Organism
Pseudotsuga menziesii
Also AS AT3G19980

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_27207.g PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PSME_46438.g Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
PSME_33898.g Ubiquitin-like domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000082 G1/S transition of mitotic cell cycle BP
GO:0000159 protein phosphatase type 2A complex CC
GO:0000228 nuclear chromosome CC
GO:0000278 mitotic cell cycle BP
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0001302 obsolete replicative cell aging BP
GO:0002097 tRNA wobble base modification BP
GO:0002098 tRNA wobble uridine modification BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004721 phosphoprotein phosphatase activity MF
GO:0004722 protein serine/threonine phosphatase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005694 chromosome CC
GO:0005730 nucleolus CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006140 regulation of nucleotide metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006281 DNA repair BP
GO:0006396 RNA processing BP
GO:0006399 tRNA metabolic process BP
GO:0006400 tRNA modification BP
GO:0006464 protein modification process BP
GO:0006468 protein phosphorylation BP
GO:0006470 protein dephosphorylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0006979 response to oxidative stress BP
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0007049 cell cycle BP
GO:0007088 regulation of mitotic nuclear division BP
GO:0007154 cell communication BP
GO:0007163 establishment or maintenance of cell polarity BP
GO:0007165 signal transduction BP
GO:0007346 regulation of mitotic cell cycle BP
GO:0007568 aging BP
GO:0007569 obsolete cell aging BP
GO:0007623 circadian rhythm BP
GO:0008033 tRNA processing BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008287 protein serine/threonine phosphatase complex CC
GO:0008360 regulation of cell shape BP
GO:0009266 response to temperature stimulus BP
GO:0009268 response to pH BP
GO:0009314 response to radiation BP
GO:0009405 obsolete pathogenesis BP
GO:0009408 response to heat BP
GO:0009416 response to light stimulus BP
GO:0009451 RNA modification BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009628 response to abiotic stimulus BP
GO:0009648 photoperiodism BP
GO:0009649 entrainment of circadian clock BP
GO:0009889 regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010562 positive regulation of phosphorus metabolic process BP
GO:0010564 regulation of cell cycle process BP
GO:0010570 regulation of filamentous growth BP
GO:0010639 negative regulation of organelle organization BP
GO:0010948 negative regulation of cell cycle process BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016310 phosphorylation BP
GO:0016311 dephosphorylation BP
GO:0016787 hydrolase activity MF
GO:0016788 hydrolase activity, acting on ester bonds MF
GO:0016791 phosphatase activity MF
GO:0019216 regulation of lipid metabolic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019747 regulation of isoprenoid metabolic process BP
GO:0019899 enzyme binding MF
GO:0019900 kinase binding MF
GO:0019901 protein kinase binding MF
GO:0022402 cell cycle process BP
GO:0022603 regulation of anatomical structure morphogenesis BP
GO:0022604 regulation of cell morphogenesis BP
GO:0023052 signaling BP
GO:0030029 actin filament-based process BP
GO:0030036 actin cytoskeleton organization BP
GO:0030447 filamentous growth BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0031505 fungal-type cell wall organization BP
GO:0031667 response to nutrient levels BP
GO:0031929 TOR signaling BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032101 regulation of response to external stimulus BP
GO:0032103 positive regulation of response to external stimulus BP
GO:0032104 regulation of response to extracellular stimulus BP
GO:0032106 positive regulation of response to extracellular stimulus BP
GO:0032107 regulation of response to nutrient levels BP
GO:0032109 positive regulation of response to nutrient levels BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032922 circadian regulation of gene expression BP
GO:0032991 protein-containing complex CC
GO:0033043 regulation of organelle organization BP
GO:0033044 regulation of chromosome organization BP
GO:0033045 regulation of sister chromatid segregation BP
GO:0033046 negative regulation of sister chromatid segregation BP
GO:0033047 regulation of mitotic sister chromatid segregation BP
GO:0033048 negative regulation of mitotic sister chromatid segregation BP
GO:0033554 cellular response to stress BP
GO:0034248 regulation of amide metabolic process BP
GO:0034250 positive regulation of amide metabolic process BP
GO:0034470 ncRNA processing BP
GO:0034599 cellular response to oxidative stress BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0035556 intracellular signal transduction BP
GO:0036168 filamentous growth of a population of unicellular organisms in response to heat BP
GO:0036170 filamentous growth of a population of unicellular organisms in response to starvation BP
GO:0036171 filamentous growth of a population of unicellular organisms in response to chemical stimulus BP
GO:0036176 response to neutral pH BP
GO:0036177 filamentous growth of a population of unicellular organisms in response to pH BP
GO:0036178 filamentous growth of a population of unicellular organisms in response to neutral pH BP
GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus BP
GO:0036211 protein modification process BP
GO:0036244 cellular response to neutral pH BP
GO:0040007 growth BP
GO:0040008 regulation of growth BP
GO:0042221 response to chemical BP
GO:0042578 phosphoric ester hydrolase activity MF
GO:0042594 response to starvation BP
GO:0042752 regulation of circadian rhythm BP
GO:0042762 regulation of sulfur metabolic process BP
GO:0043085 positive regulation of catalytic activity BP
GO:0043153 entrainment of circadian clock by photoperiod BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0044093 positive regulation of molecular function BP
GO:0044182 filamentous growth of a population of unicellular organisms BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044419 biological process involved in interspecies interaction between organisms BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0044770 cell cycle phase transition BP
GO:0044772 mitotic cell cycle phase transition BP
GO:0044843 cell cycle G1/S phase transition BP
GO:0045229 external encapsulating structure organization BP
GO:0045786 negative regulation of cell cycle BP
GO:0045828 positive regulation of isoprenoid metabolic process BP
GO:0045834 positive regulation of lipid metabolic process BP
GO:0045839 negative regulation of mitotic nuclear division BP
GO:0045927 positive regulation of growth BP
GO:0045930 negative regulation of mitotic cell cycle BP
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0045937 positive regulation of phosphate metabolic process BP
GO:0045981 positive regulation of nucleotide metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046889 positive regulation of lipid biosynthetic process BP
GO:0046890 regulation of lipid biosynthetic process BP
GO:0047485 obsolete protein N-terminus binding MF
GO:0048511 rhythmic process BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051128 regulation of cellular component organization BP
GO:0051129 negative regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051176 positive regulation of sulfur metabolic process BP
GO:0051193 obsolete regulation of cofactor metabolic process BP
GO:0051194 obsolete positive regulation of cofactor metabolic process BP
GO:0051196 obsolete regulation of coenzyme metabolic process BP
GO:0051197 obsolete positive regulation of coenzyme metabolic process BP
GO:0051341 regulation of oxidoreductase activity BP
GO:0051353 positive regulation of oxidoreductase activity BP
GO:0051704 obsolete multi-organism process BP
GO:0051716 cellular response to stimulus BP
GO:0051726 regulation of cell cycle BP
GO:0051783 regulation of nuclear division BP
GO:0051784 negative regulation of nuclear division BP
GO:0051983 regulation of chromosome segregation BP
GO:0051985 negative regulation of chromosome segregation BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0062012 regulation of small molecule metabolic process BP
GO:0062013 positive regulation of small molecule metabolic process BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0070262 peptidyl-serine dephosphorylation BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071071 regulation of phospholipid biosynthetic process BP
GO:0071073 positive regulation of phospholipid biosynthetic process BP
GO:0071214 cellular response to abiotic stimulus BP
GO:0071467 cellular response to pH BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071555 cell wall organization BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071852 fungal-type cell wall organization or biogenesis BP
GO:0071963 establishment or maintenance of cell polarity regulating cell shape BP
GO:0072357 PTW/PP1 phosphatase complex CC
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0090033 positive regulation of filamentous growth BP
GO:0090304 nucleic acid metabolic process BP
GO:0104004 cellular response to environmental stimulus BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1900428 regulation of filamentous growth of a population of unicellular organisms BP
GO:1900430 positive regulation of filamentous growth of a population of unicellular organisms BP
GO:1900434 regulation of filamentous growth of a population of unicellular organisms in response to starvation BP
GO:1900436 positive regulation of filamentous growth of a population of unicellular organisms in response to starvation BP
GO:1900437 regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus BP
GO:1900439 positive regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus BP
GO:1900440 regulation of filamentous growth of a population of unicellular organisms in response to neutral pH BP
GO:1900442 positive regulation of filamentous growth of a population of unicellular organisms in response to neutral pH BP
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway BP
GO:1900490 obsolete positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity BP
GO:1900542 regulation of purine nucleotide metabolic process BP
GO:1900544 positive regulation of purine nucleotide metabolic process BP
GO:1900741 regulation of filamentous growth of a population of unicellular organisms in response to pH BP
GO:1900743 positive regulation of filamentous growth of a population of unicellular organisms in response to pH BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1902494 catalytic complex CC
GO:1903047 mitotic cell cycle process BP
GO:1903293 phosphatase complex CC
GO:1903725 regulation of phospholipid metabolic process BP
GO:1903727 positive regulation of phospholipid metabolic process BP
GO:2001210 regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway BP
GO:2001215 obsolete regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity BP
GO:2001251 negative regulation of chromosome organization BP