Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_09882.g
Position
jcf7190000027116:249569-288614 (+)
39045bp
Gene Type
gene
Gene Description (Protein Product)
Small ubiquitin-related modifier
Organism
Pseudotsuga menziesii
Also AS AT4G26840

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_20856.g gibberellin receptor
PSME_15778.g Ubiquitin-conjugating enzyme E2, catalytic domain homologues
PSME_14453.g Belongs to the ubiquitin-conjugating enzyme family
Regulatory gene
PSME_00031.g ZINC FINGER protein
PSME_00335.g Aspartate glutamate uridylate kinase family protein
PSME_00528.g ZINC FINGER protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Pathway
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.