Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_15612.g
Position
jcf7190000049398:346286-354174 (-)
7888bp
Gene Type
gene
Gene Description (Protein Product)
Protein translocase subunit SecA
Organism
Pseudotsuga menziesii
Also AS AT4G01800

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_22183.g Belongs to the SecA family
PSME_49831.g Belongs to the SecA family
PSME_38319.g Sec-independent protein translocase protein TATC
Regulatory gene
PSME_00031.g ZINC FINGER protein
PSME_00528.g ZINC FINGER protein
PSME_00595.g Mini zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000166 nucleotide binding MF
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005215 transporter activity MF
GO:0005488 binding MF
GO:0005524 ATP binding MF
GO:0006810 transport BP
GO:0008104 protein localization BP
GO:0008144 obsolete drug binding MF
GO:0008150 biological_process BP
GO:0008320 protein transmembrane transporter activity MF
GO:0008565 obsolete protein transporter activity MF
GO:0015031 protein transport BP
GO:0015399 primary active transmembrane transporter activity MF
GO:0015405 ATPase-coupled transmembrane transporter activity MF
GO:0015440 ABC-type peptide transporter activity MF
GO:0015450 protein-transporting ATPase activity MF
GO:0015462 ABC-type protein transporter activity MF
GO:0015833 peptide transport BP
GO:0016462 pyrophosphatase activity MF
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017076 purine nucleotide binding MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0022804 active transmembrane transporter activity MF
GO:0022857 transmembrane transporter activity MF
GO:0022884 macromolecule transmembrane transporter activity MF
GO:0030554 adenyl nucleotide binding MF
GO:0032553 ribonucleotide binding MF
GO:0032555 purine ribonucleotide binding MF
GO:0032559 adenyl ribonucleotide binding MF
GO:0033036 macromolecule localization BP
GO:0033220 obsolete ATPase-coupled amide-transporter activity MF
GO:0035639 purine ribonucleoside triphosphate binding MF
GO:0036094 small molecule binding MF
GO:0042623 ATP hydrolysis activity MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0042886 amide transport BP
GO:0042887 amide transmembrane transporter activity MF
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043492 ATPase-coupled transmembrane transporter activity MF
GO:0045184 establishment of protein localization BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0055085 transmembrane transport BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071806 protein transmembrane transport BP
GO:0097159 organic cyclic compound binding MF
GO:0097367 carbohydrate derivative binding MF
GO:1901265 nucleoside phosphate binding MF
GO:1901363 heterocyclic compound binding MF
GO:1904680 peptide transmembrane transporter activity MF
KEGG Term Name Description
map03060 Protein export The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.