Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_23171.g
Position
jcf7190000039293:6169-7003 (-)
834bp
Gene Type
gene
Gene Description (Protein Product)
Polygalacturonase
Organism
Pseudotsuga menziesii
Also AS AT3G57510

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_29546.g Acts in the modification of cell walls via demethylesterification of cell wall pectin
PSME_38647.g pectinesterase pectinesterase inhibitor
PSME_36862.g glucuronokinase
Regulatory gene
PSME_00767.g transcription factor
PSME_01516.g transcription factor
PSME_03183.g AP2 ERF and B3 domain-containing transcription

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000272 polysaccharide catabolic process BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds MF
GO:0004650 polygalacturonase activity MF
GO:0005975 carbohydrate metabolic process BP
GO:0005976 polysaccharide metabolic process BP
GO:0007275 multicellular organism development BP
GO:0007276 gamete generation BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009555 pollen development BP
GO:0009664 plant-type cell wall organization BP
GO:0009791 post-embryonic development BP
GO:0009827 plant-type cell wall modification BP
GO:0009830 cell wall modification involved in abscission BP
GO:0009838 abscission BP
GO:0009900 dehiscence BP
GO:0009901 anther dehiscence BP
GO:0009908 flower development BP
GO:0009987 cellular process BP
GO:0010047 fruit dehiscence BP
GO:0010393 galacturonan metabolic process BP
GO:0016043 cellular component organization BP
GO:0016052 carbohydrate catabolic process BP
GO:0016787 hydrolase activity MF
GO:0016798 hydrolase activity, acting on glycosyl bonds MF
GO:0017144 xenobiotic metabolic process BP
GO:0019953 sexual reproduction BP
GO:0022411 cellular component disassembly BP
GO:0022412 cellular process involved in reproduction in multicellular organism BP
GO:0022414 reproductive process BP
GO:0030154 cell differentiation BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032504 multicellular organism reproduction BP
GO:0042545 cell wall modification BP
GO:0042737 xenobiotic catabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044277 cell wall disassembly BP
GO:0044703 multi-organism reproductive process BP
GO:0045229 external encapsulating structure organization BP
GO:0045488 pectin metabolic process BP
GO:0045490 pectin catabolic process BP
GO:0048229 gametophyte development BP
GO:0048232 male gamete generation BP
GO:0048235 pollen sperm cell differentiation BP
GO:0048367 shoot system development BP
GO:0048437 floral organ development BP
GO:0048438 floral whorl development BP
GO:0048443 stamen development BP
GO:0048466 androecium development BP
GO:0048608 reproductive structure development BP
GO:0048609 multicellular organismal reproductive process BP
GO:0048653 anther development BP
GO:0048731 system development BP
GO:0048827 phyllome development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0051704 obsolete multi-organism process BP
GO:0055046 microgametogenesis BP
GO:0061458 reproductive system development BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071555 cell wall organization BP
GO:0071669 plant-type cell wall organization or biogenesis BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090567 reproductive shoot system development BP
GO:0099402 plant organ development BP
GO:1901575 organic substance catabolic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map01100 Metabolic pathways -
map00040 Pentose and glucuronate interconversions -
map00040 Pentose and glucuronate interconversions -