Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_29277.g
Position
jcf7190000083661:27876-40986 (+)
13110bp
Gene Type
gene
Gene Description (Protein Product)
Poly (ADP-ribose) polymerase
Organism
Pseudotsuga menziesii
Also AS AT1G32230

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_29780.g Ankyrin repeats (many copies)
PSME_31442.g Salt tolerance protein-like
PSME_35367.g AP2 domain
Regulatory gene
PSME_04282.g Agamous-like MADS-box protein
PSME_09979.g Dof zinc finger protein
PSME_10012.g NAC transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000160 phosphorelay signal transduction system BP
GO:0000302 response to reactive oxygen species BP
GO:0000303 response to superoxide BP
GO:0000305 response to oxygen radical BP
GO:0001101 response to acid chemical BP
GO:0001505 regulation of neurotransmitter levels BP
GO:0002376 immune system process BP
GO:0003006 developmental process involved in reproduction BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0006807 nitrogen compound metabolic process BP
GO:0006809 nitric oxide biosynthetic process BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006955 immune response BP
GO:0006970 response to osmotic stress BP
GO:0006979 response to oxidative stress BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008219 cell death BP
GO:0009058 biosynthetic process BP
GO:0009314 response to radiation BP
GO:0009414 response to water deprivation BP
GO:0009415 response to water BP
GO:0009416 response to light stimulus BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009628 response to abiotic stimulus BP
GO:0009648 photoperiodism BP
GO:0009651 response to salt stress BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009719 response to endogenous stimulus BP
GO:0009723 response to ethylene BP
GO:0009725 response to hormone BP
GO:0009753 response to jasmonic acid BP
GO:0009755 hormone-mediated signaling pathway BP
GO:0009790 embryo development BP
GO:0009791 post-embryonic development BP
GO:0009793 embryo development ending in seed dormancy BP
GO:0009814 defense response to other organism BP
GO:0009816 defense response to bacterium BP
GO:0009867 jasmonic acid mediated signaling pathway BP
GO:0009873 ethylene-activated signaling pathway BP
GO:0009987 cellular process BP
GO:0010015 root morphogenesis BP
GO:0010033 response to organic substance BP
GO:0010035 response to inorganic substance BP
GO:0010101 post-embryonic root morphogenesis BP
GO:0010102 lateral root morphogenesis BP
GO:0010154 fruit development BP
GO:0010193 response to ozone BP
GO:0010228 vegetative to reproductive phase transition of meristem BP
GO:0012501 programmed cell death BP
GO:0017144 xenobiotic metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0022414 reproductive process BP
GO:0022622 root system development BP
GO:0023052 signaling BP
GO:0031323 regulation of cellular metabolic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032870 cellular response to hormone stimulus BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0035556 intracellular signal transduction BP
GO:0042133 neurotransmitter metabolic process BP
GO:0042136 neurotransmitter biosynthetic process BP
GO:0042221 response to chemical BP
GO:0042493 response to xenobiotic stimulus BP
GO:0042742 defense response to bacterium BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0045087 innate immune response BP
GO:0046209 nitric oxide metabolic process BP
GO:0046677 response to antibiotic BP
GO:0048316 seed development BP
GO:0048364 root development BP
GO:0048527 lateral root development BP
GO:0048528 post-embryonic root development BP
GO:0048573 photoperiodism, flowering BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0051716 cellular response to stimulus BP
GO:0061458 reproductive system development BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071229 cellular response to acid chemical BP
GO:0071310 cellular response to organic substance BP
GO:0071369 cellular response to ethylene stimulus BP
GO:0071395 cellular response to jasmonic acid stimulus BP
GO:0071495 cellular response to endogenous stimulus BP
GO:0072593 reactive oxygen species metabolic process BP
GO:0090696 post-embryonic plant organ development BP
GO:0090697 post-embryonic plant organ morphogenesis BP
GO:0090698 post-embryonic plant morphogenesis BP
GO:0098542 defense response to other organism BP
GO:0099402 plant organ development BP
GO:1901700 response to oxygen-containing compound BP
GO:1901701 cellular response to oxygen-containing compound BP
GO:1903409 reactive oxygen species biosynthetic process BP
GO:1905392 plant organ morphogenesis BP
GO:2000377 regulation of reactive oxygen species metabolic process BP
GO:2001057 reactive nitrogen species metabolic process BP