PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	PSME_32019.g
Position	jcf7190000068427:64424-65720 (+) 1296bp
Gene Type	gene
Gene Description (Protein Product)	pyramidal neuron development
Organism	Pseudotsuga menziesii
Also AS	AT5G23580

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Regulatory gene

PSME_00050.g ethylene-responsive transcription factor

PSME_00087.g ethylene-responsive transcription factor

PSME_00128.g ethylene-responsive transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000226	microtubule cytoskeleton organization	BP
GO:0000278	mitotic cell cycle	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004672	protein kinase activity	MF
GO:0004674	protein serine/threonine kinase activity	MF
GO:0004683	calmodulin-dependent protein kinase activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005516	calmodulin binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005813	centrosome	CC
GO:0005815	microtubule organizing center	CC
GO:0005856	cytoskeleton	CC
GO:0005875	microtubule associated complex	CC
GO:0006464	protein modification process	BP
GO:0006468	protein phosphorylation	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007017	microtubule-based process	BP
GO:0007026	negative regulation of microtubule depolymerization	BP
GO:0007049	cell cycle	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0007399	nervous system development	BP
GO:0007417	central nervous system development	BP
GO:0007420	brain development	BP
GO:0008017	microtubule binding	MF
GO:0008092	cytoskeletal protein binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009931	calcium-dependent protein serine/threonine kinase activity	MF
GO:0009987	cellular process	BP
GO:0010639	negative regulation of organelle organization	BP
GO:0010857	calcium-dependent protein kinase activity	MF
GO:0015630	microtubule cytoskeleton	CC
GO:0015631	tubulin binding	MF
GO:0016043	cellular component organization	BP
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016773	phosphotransferase activity, alcohol group as acceptor	MF
GO:0018105	peptidyl-serine phosphorylation	BP
GO:0018107	peptidyl-threonine phosphorylation	BP
GO:0018193	peptidyl-amino acid modification	BP
GO:0018209	peptidyl-serine modification	BP
GO:0018210	peptidyl-threonine modification	BP
GO:0019538	protein metabolic process	BP
GO:0021537	telencephalon development	BP
GO:0021543	pallium development	BP
GO:0021761	limbic system development	BP
GO:0021766	hippocampus development	BP
GO:0021859	pyramidal neuron differentiation	BP
GO:0021860	pyramidal neuron development	BP
GO:0021872	forebrain generation of neurons	BP
GO:0021879	forebrain neuron differentiation	BP
GO:0021884	forebrain neuron development	BP
GO:0021953	central nervous system neuron differentiation	BP
GO:0021954	central nervous system neuron development	BP
GO:0022008	neurogenesis	BP
GO:0022402	cell cycle process	BP
GO:0023052	signaling	BP
GO:0030154	cell differentiation	BP
GO:0030182	neuron differentiation	BP
GO:0030900	forebrain development	BP
GO:0031110	regulation of microtubule polymerization or depolymerization	BP
GO:0031111	negative regulation of microtubule polymerization or depolymerization	BP
GO:0031114	regulation of microtubule depolymerization	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032879	regulation of localization	BP
GO:0032880	regulation of protein localization	BP
GO:0032886	regulation of microtubule-based process	BP
GO:0032991	protein-containing complex	CC
GO:0033043	regulation of organelle organization	BP
GO:0035556	intracellular signal transduction	BP
GO:0036211	protein modification process	BP
GO:0040001	establishment of mitotic spindle localization	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043242	negative regulation of protein-containing complex disassembly	BP
GO:0043244	regulation of protein-containing complex disassembly	BP
GO:0043412	macromolecule modification	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046777	protein autophosphorylation	BP
GO:0048468	cell development	BP
GO:0048513	animal organ development	BP
GO:0048519	negative regulation of biological process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048666	neuron development	BP
GO:0048699	generation of neurons	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051129	negative regulation of cellular component organization	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051293	establishment of spindle localization	BP
GO:0051493	regulation of cytoskeleton organization	BP
GO:0051494	negative regulation of cytoskeleton organization	BP
GO:0051640	organelle localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051653	spindle localization	BP
GO:0051656	establishment of organelle localization	BP
GO:0051716	cellular response to stimulus	BP
GO:0060322	head development	BP
GO:0060341	regulation of cellular localization	BP
GO:0065007	biological regulation	BP
GO:0070507	regulation of microtubule cytoskeleton organization	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0140096	catalytic activity, acting on a protein	MF
GO:1900180	regulation of protein localization to nucleus	BP
GO:1900181	negative regulation of protein localization to nucleus	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901879	regulation of protein depolymerization	BP
GO:1901880	negative regulation of protein depolymerization	BP
GO:1902850	microtubule cytoskeleton organization involved in mitosis	BP
GO:1902903	regulation of supramolecular fiber organization	BP
GO:1902904	negative regulation of supramolecular fiber organization	BP
GO:1903047	mitotic cell cycle process	BP
GO:1903827	regulation of protein localization	BP
GO:1903828	negative regulation of protein localization	BP