Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_36875.g
Position
jcf7190000003279:806301-812120 (+)
5819bp
Gene Type
gene
Gene Description (Protein Product)
Cold acclimation protein WCOR413
Organism
Pseudotsuga menziesii
Also AS AT1G29395

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_41836.g Phosphoinositide phospholipase C
PSME_38593.g phosphatase 2C
PSME_47348.g 6-phosphogluconolactonase
Regulatory gene
PSME_00390.g Protein of unknown function, DUF573
PSME_00767.g transcription factor
PSME_02207.g Mediator-associated protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0001101 response to acid chemical BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006950 response to stress BP
GO:0007154 cell communication BP
GO:0008150 biological_process BP
GO:0009266 response to temperature stimulus BP
GO:0009409 response to cold BP
GO:0009414 response to water deprivation BP
GO:0009415 response to water BP
GO:0009507 chloroplast CC
GO:0009526 plastid envelope CC
GO:0009528 plastid inner membrane CC
GO:0009534 chloroplast thylakoid CC
GO:0009535 chloroplast thylakoid membrane CC
GO:0009536 plastid CC
GO:0009579 thylakoid CC
GO:0009605 response to external stimulus BP
GO:0009628 response to abiotic stimulus BP
GO:0009631 cold acclimation BP
GO:0009706 chloroplast inner membrane CC
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009737 response to abscisic acid BP
GO:0009941 chloroplast envelope CC
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0010033 response to organic substance BP
GO:0010035 response to inorganic substance BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0019866 organelle inner membrane CC
GO:0031090 organelle membrane CC
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031300 obsolete intrinsic component of organelle membrane CC
GO:0031301 obsolete integral component of organelle membrane CC
GO:0031350 obsolete intrinsic component of plastid membrane CC
GO:0031351 obsolete integral component of plastid membrane CC
GO:0031352 obsolete intrinsic component of plastid inner membrane CC
GO:0031353 obsolete integral component of plastid inner membrane CC
GO:0031356 obsolete intrinsic component of chloroplast inner membrane CC
GO:0031357 obsolete integral component of chloroplast inner membrane CC
GO:0031668 cellular response to extracellular stimulus BP
GO:0031967 organelle envelope CC
GO:0031969 chloroplast membrane CC
GO:0031975 envelope CC
GO:0031976 plastid thylakoid CC
GO:0031984 organelle subcompartment CC
GO:0033554 cellular response to stress BP
GO:0033993 response to lipid BP
GO:0034357 photosynthetic membrane CC
GO:0042170 plastid membrane CC
GO:0042221 response to chemical BP
GO:0042631 cellular response to water deprivation BP
GO:0042651 thylakoid membrane CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044436 obsolete thylakoid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0050896 response to stimulus BP
GO:0051716 cellular response to stimulus BP
GO:0055035 plastid thylakoid membrane CC
GO:0070417 cellular response to cold BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071214 cellular response to abiotic stimulus BP
GO:0071229 cellular response to acid chemical BP
GO:0071462 cellular response to water stimulus BP
GO:0071496 cellular response to external stimulus BP
GO:0097305 response to alcohol BP
GO:0104004 cellular response to environmental stimulus BP
GO:1901700 response to oxygen-containing compound BP
GO:1901701 cellular response to oxygen-containing compound BP