Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_45897.g
Position
jcf7190000011018:64116-65186 (+)
1070bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the universal ribosomal protein uS15 family
Organism
Pseudotsuga menziesii
Also AS AT4G00100

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_48563.g 30S ribosomal protein S6 alpha
PSME_49445.g Belongs to the eukaryotic ribosomal protein eS1 family
PSME_50486.g Guanine nucleotide-binding protein subunit
Regulatory gene
PSME_09979.g Dof zinc finger protein
PSME_13054.g dof zinc finger protein
PSME_20265.g dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000278 mitotic cell cycle BP
GO:0000281 mitotic cytokinesis BP
GO:0000902 cell morphogenesis BP
GO:0000904 cell morphogenesis involved in differentiation BP
GO:0000910 cytokinesis BP
GO:0000911 cytokinesis by cell plate formation BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003735 structural constituent of ribosome MF
GO:0005198 structural molecule activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005618 cell wall CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005730 nucleolus CC
GO:0005737 cytoplasm CC
GO:0005783 endoplasmic reticulum CC
GO:0005829 cytosol CC
GO:0005840 ribosome CC
GO:0006412 translation BP
GO:0006518 peptide metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007049 cell cycle BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009653 anatomical structure morphogenesis BP
GO:0009888 tissue development BP
GO:0009965 leaf morphogenesis BP
GO:0009987 cellular process BP
GO:0010016 shoot system morphogenesis BP
GO:0010026 trichome differentiation BP
GO:0010090 trichome morphogenesis BP
GO:0010467 gene expression BP
GO:0012505 endomembrane system CC
GO:0015935 small ribosomal subunit CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0019538 protein metabolic process BP
GO:0019843 rRNA binding MF
GO:0022402 cell cycle process BP
GO:0022626 cytosolic ribosome CC
GO:0022627 cytosolic small ribosomal subunit CC
GO:0030154 cell differentiation BP
GO:0030312 external encapsulating structure CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032506 cytokinetic process BP
GO:0032989 cellular component morphogenesis BP
GO:0032991 protein-containing complex CC
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0043043 peptide biosynthetic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043603 amide metabolic process BP
GO:0043604 amide biosynthetic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044391 ribosomal subunit CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044445 obsolete cytosolic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0048366 leaf development BP
GO:0048367 shoot system development BP
GO:0048468 cell development BP
GO:0048731 system development BP
GO:0048827 phyllome development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0051301 cell division BP
GO:0061640 cytoskeleton-dependent cytokinesis BP
GO:0070013 intracellular organelle lumen CC
GO:0070181 small ribosomal subunit rRNA binding MF
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0090558 plant epidermis development BP
GO:0090626 plant epidermis morphogenesis BP
GO:0097159 organic cyclic compound binding MF
GO:0099402 plant organ development BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1902410 mitotic cytokinetic process BP
GO:1903047 mitotic cell cycle process BP
GO:1905392 plant organ morphogenesis BP
GO:1990904 ribonucleoprotein complex CC
KEGG Term Name Description
map03010 Ribosome -