Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_48129.g
Position
jcf7190000047381:262279-275683 (+)
13404bp
Gene Type
gene
Gene Description (Protein Product)
SNF2 domain-containing protein
Organism
Pseudotsuga menziesii
Also AS AT2G16390

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_48400.g Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
PSME_50603.g Belongs to the histone deacetylase family. HD Type 1 subfamily
PSME_51375.g DNA mismatch repair protein
Regulatory gene
PSME_00031.g ZINC FINGER protein
PSME_00335.g Aspartate glutamate uridylate kinase family protein
PSME_00528.g ZINC FINGER protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Pathway
KEGG Term Name Description
map03440 Homologous recombination Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.