Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_48420.g
Position
jcf7190000002678:682886-752420 (-)
69534bp
Gene Type
gene
Gene Description (Protein Product)
Protein TRANSPARENT TESTA
Organism
Pseudotsuga menziesii
Also AS AT3G26590

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_49568.g DNA-directed RNA polymerases II, IV and V subunit
Regulatory gene
PSME_09926.g Homeobox-leucine zipper protein
PSME_09979.g Dof zinc finger protein
PSME_10289.g GATA transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005215 transporter activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0006810 transport BP
GO:0006855 xenobiotic transmembrane transport BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009624 response to nematode BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009888 tissue development BP
GO:0009987 cellular process BP
GO:0010015 root morphogenesis BP
GO:0010053 root epidermal cell differentiation BP
GO:0010054 trichoblast differentiation BP
GO:0015238 xenobiotic transmembrane transporter activity MF
GO:0015893 xenobiotic transport BP
GO:0016020 membrane CC
GO:0016049 cell growth BP
GO:0021700 developmental maturation BP
GO:0022622 root system development BP
GO:0022857 transmembrane transporter activity MF
GO:0030154 cell differentiation BP
GO:0031090 organelle membrane CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0040007 growth BP
GO:0042221 response to chemical BP
GO:0042493 response to xenobiotic stimulus BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044437 obsolete vacuolar part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0048364 root development BP
GO:0048468 cell development BP
GO:0048469 cell maturation BP
GO:0048588 developmental cell growth BP
GO:0048589 developmental growth BP
GO:0048731 system development BP
GO:0048764 trichoblast maturation BP
GO:0048765 root hair cell differentiation BP
GO:0048767 root hair elongation BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0055085 transmembrane transport BP
GO:0060560 developmental growth involved in morphogenesis BP
GO:0071695 anatomical structure maturation BP
GO:0080147 root hair cell development BP
GO:0090558 plant epidermis development BP
GO:0090627 plant epidermal cell differentiation BP
GO:0098588 bounding membrane of organelle CC
GO:0098805 membrane CC
GO:0099402 plant organ development BP
GO:1905392 plant organ morphogenesis BP