Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_50297.g
Position
jcf7190000048671:716131-725028 (-)
8897bp
Gene Type
gene
Gene Description (Protein Product)
"Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis
Organism
Pseudotsuga menziesii
Also AS AT3G12280

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_51332.g tesmin TSO1-like CXC
PSME_50754.g Structural maintenance of chromosomes protein
PSME_51274.g C-terminal binding protein
Regulatory gene
PSME_00335.g Aspartate glutamate uridylate kinase family protein
PSME_00767.g transcription factor
PSME_00870.g Aspartate glutamate uridylate kinase family protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000082 G1/S transition of mitotic cell cycle BP
GO:0000278 mitotic cell cycle BP
GO:0000280 nuclear division BP
GO:0000902 cell morphogenesis BP
GO:0000904 cell morphogenesis involved in differentiation BP
GO:0001558 regulation of cell growth BP
GO:0001708 cell fate specification BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006275 regulation of DNA replication BP
GO:0006349 regulation of gene expression by genomic imprinting BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0007049 cell cycle BP
GO:0007059 chromosome segregation BP
GO:0007127 meiosis I BP
GO:0007129 homologous chromosome pairing at meiosis BP
GO:0007275 multicellular organism development BP
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008356 asymmetric cell division BP
GO:0009553 embryo sac development BP
GO:0009555 pollen development BP
GO:0009566 fertilization BP
GO:0009567 double fertilization forming a zygote and endosperm BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009791 post-embryonic development BP
GO:0009888 tissue development BP
GO:0009889 regulation of biosynthetic process BP
GO:0009987 cellular process BP
GO:0010016 shoot system morphogenesis BP
GO:0010026 trichome differentiation BP
GO:0010052 guard cell differentiation BP
GO:0010090 trichome morphogenesis BP
GO:0010103 stomatal complex morphogenesis BP
GO:0010374 stomatal complex development BP
GO:0010377 guard cell fate commitment BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010564 regulation of cell cycle process BP
GO:0016043 cellular component organization BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019953 sexual reproduction BP
GO:0022402 cell cycle process BP
GO:0022414 reproductive process BP
GO:0022619 generative cell differentiation BP
GO:0030154 cell differentiation BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032875 regulation of DNA endoreduplication BP
GO:0032989 cellular component morphogenesis BP
GO:0033043 regulation of organelle organization BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0040008 regulation of growth BP
GO:0040029 epigenetic regulation of gene expression BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0044770 cell cycle phase transition BP
GO:0044772 mitotic cell cycle phase transition BP
GO:0044843 cell cycle G1/S phase transition BP
GO:0045132 meiotic chromosome segregation BP
GO:0045143 homologous chromosome segregation BP
GO:0045165 cell fate commitment BP
GO:0046483 heterocycle metabolic process BP
GO:0048229 gametophyte development BP
GO:0048285 organelle fission BP
GO:0048366 leaf development BP
GO:0048367 shoot system development BP
GO:0048468 cell development BP
GO:0048731 system development BP
GO:0048827 phyllome development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0051052 regulation of DNA metabolic process BP
GO:0051128 regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051276 chromosome organization BP
GO:0051301 cell division BP
GO:0051321 meiotic cell cycle BP
GO:0051704 obsolete multi-organism process BP
GO:0051726 regulation of cell cycle BP
GO:0051783 regulation of nuclear division BP
GO:0055046 microgametogenesis BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061982 meiosis I cell cycle process BP
GO:0065007 biological regulation BP
GO:0070192 chromosome organization involved in meiotic cell cycle BP
GO:0071514 genomic imprinting BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090329 regulation of DNA-templated DNA replication BP
GO:0090558 plant epidermis development BP
GO:0090626 plant epidermis morphogenesis BP
GO:0090627 plant epidermal cell differentiation BP
GO:0090698 post-embryonic plant morphogenesis BP
GO:0097159 organic cyclic compound binding MF
GO:0098813 nuclear chromosome segregation BP
GO:0099402 plant organ development BP
GO:0140013 meiotic nuclear division BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1903046 meiotic cell cycle process BP
GO:1903047 mitotic cell cycle process BP
GO:1903866 palisade mesophyll development BP
GO:2000036 regulation of stem cell population maintenance BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000653 regulation of genetic imprinting BP