Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_50761.g
Position
jcf7190000039574:416266-474856 (-)
58590bp
Gene Type
gene
Gene Description (Protein Product)
Tetratricopeptide repeat
Organism
Pseudotsuga menziesii
Also AS AT3G51280

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_51041.g Protein LOW PSII ACCUMULATION 1, chloroplastic
Regulatory gene
PSME_09979.g Dof zinc finger protein
PSME_13054.g dof zinc finger protein
PSME_20265.g dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0006109 regulation of carbohydrate metabolic process BP
GO:0006792 regulation of sulfur utilization BP
GO:0006950 response to stress BP
GO:0006996 organelle organization BP
GO:0007154 cell communication BP
GO:0008150 biological_process BP
GO:0009267 cellular response to starvation BP
GO:0009605 response to external stimulus BP
GO:0009657 plastid organization BP
GO:0009658 chloroplast organization BP
GO:0009889 regulation of biosynthetic process BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0010438 cellular response to sulfur starvation BP
GO:0010439 regulation of glucosinolate biosynthetic process BP
GO:0010675 regulation of cellular carbohydrate metabolic process BP
GO:0016043 cellular component organization BP
GO:0017053 transcription repressor complex CC
GO:0019222 regulation of metabolic process BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031667 response to nutrient levels BP
GO:0031668 cellular response to extracellular stimulus BP
GO:0031669 cellular response to nutrient levels BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032991 protein-containing complex CC
GO:0033554 cellular response to stress BP
GO:0042594 response to starvation BP
GO:0042762 regulation of sulfur metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043255 regulation of carbohydrate biosynthetic process BP
GO:0043455 regulation of secondary metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051716 cellular response to stimulus BP
GO:0062012 regulation of small molecule metabolic process BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0071496 cellular response to external stimulus BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090568 transcription repressor complex CC
GO:1900376 regulation of secondary metabolite biosynthetic process BP