Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_50765.g
Position
jcf7190000036647:272350-515569 (-)
243219bp
Gene Type
gene
Gene Description (Protein Product)
GRAM domain-containing protein
Organism
Pseudotsuga menziesii
Also AS AT1G02120

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_51040.g cyclic nucleotide-gated ion channel
PSME_51389.g Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle
PSME_51111.g autophagy protein
Regulatory gene
PSME_04282.g Agamous-like MADS-box protein
PSME_09979.g Dof zinc finger protein
PSME_13054.g dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0001101 response to acid chemical BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005783 endoplasmic reticulum CC
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0008150 biological_process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009719 response to endogenous stimulus BP
GO:0009723 response to ethylene BP
GO:0009725 response to hormone BP
GO:0009751 response to salicylic acid BP
GO:0010033 response to organic substance BP
GO:0010941 regulation of cell death BP
GO:0012505 endomembrane system CC
GO:0014070 response to organic cyclic compound BP
GO:0042221 response to chemical BP
GO:0042493 response to xenobiotic stimulus BP
GO:0042742 defense response to bacterium BP
GO:0043067 regulation of programmed cell death BP
GO:0043069 negative regulation of programmed cell death BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046677 response to antibiotic BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0060548 negative regulation of cell death BP
GO:0065007 biological regulation BP
GO:0098542 defense response to other organism BP
GO:1901700 response to oxygen-containing compound BP